Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1f15r
         (873 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0501 - 10999203-10999754,11000724-11001460,11001461-110018...    86   3e-17
02_05_0955 - 33056171-33057256                                         30   2.8  
10_08_0005 + 14030414-14030519,14030612-14030921,14031012-140312...    28   8.5  

>02_02_0501 -
           10999203-10999754,11000724-11001460,11001461-11001836,
           11001917-11001946,11002718-11002912,11003604-11004149
          Length = 811

 Score = 86.2 bits (204), Expect = 3e-17
 Identities = 39/94 (41%), Positives = 59/94 (62%)
 Frame = -1

Query: 840 FQCGVSGAPVTSWLYYNTMYTERYMGLPTPEDNLSGYEAGDVTLLVDKLAGHDFYIMHGN 661
           F C VSGAPVT+W  Y+T YTE+YMGLP+  +    Y  G +   V  L G    ++HG 
Sbjct: 698 FSCAVSGAPVTAWDGYDTFYTEKYMGLPS--EQRDAYRYGSIMHHVKNLRGR-LLLIHGM 754

Query: 660 ADDNVHYQNAAKLMRALQEKDIPFEQMSYPDEAH 559
            D+NVH+++ A+L+ +L  +  P++ + +PDE H
Sbjct: 755 IDENVHFRHTARLINSLMAEGKPYDILLFPDERH 788


>02_05_0955 - 33056171-33057256
          Length = 361

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 631 CVLIVHIIVGVS-VHDVEVMTGQFVN*ERDVTGFVSRQIVFWSRK 762
           CV +    VG + VH+V V  G+  + + D+ G +  Q  FW  K
Sbjct: 174 CVFLAGESVGANIVHNVAVRAGEVFDDDIDIEGMILLQPYFWGTK 218


>10_08_0005 +
           14030414-14030519,14030612-14030921,14031012-14031233,
           14031326-14031565,14031727-14031804,14031841-14032036,
           14032084-14032265,14032351-14032433,14032526-14032650,
           14032762-14032840,14032924-14033092,14033171-14033231,
           14033312-14033434,14033552-14033749,14033927-14033995,
           14034244-14034320,14034475-14034562
          Length = 801

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 666 GNADDNVHYQNAAKLMRALQEKDIPFEQMSYPDEAHSL 553
           G AD  V   N  +  RAL+E+      M +PD+ H +
Sbjct: 734 GGADLRVPISNGLQYARALRERGGEIRIMMFPDDIHEI 771


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,550,511
Number of Sequences: 37544
Number of extensions: 425200
Number of successful extensions: 825
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)