Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1f15f
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69883-1|CAA93743.1| 829|Caenorhabditis elegans Hypothetical pr... 49 3e-06
Z81129-6|CAB03412.1| 799|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z81129-5|CAB03411.1| 779|Caenorhabditis elegans Hypothetical pr... 44 1e-04
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 31 0.58
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 31 0.77
Z66560-2|CAE17736.1| 127|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z50872-4|CAA90757.2| 498|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z70780-2|CAA94821.1| 468|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr... 28 7.1
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ... 28 7.1
AF043698-4|AAB97560.1| 275|Caenorhabditis elegans Hypothetical ... 28 7.1
AF043698-3|AAK68268.1| 268|Caenorhabditis elegans Hypothetical ... 28 7.1
>Z69883-1|CAA93743.1| 829|Caenorhabditis elegans Hypothetical
protein C27C12.7 protein.
Length = 829
Score = 49.2 bits (112), Expect = 3e-06
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Frame = +3
Query: 483 HSLAYVLNNNVYYL--PENRNQAIQLTNDGIPGVIYN--GHTDWVYEEDVMYTGQATWFS 650
+ YV N N+YY PE + AIQLT + G +N G +W+YEE+++ A W+S
Sbjct: 213 NDFVYVHNYNLYYQKDPEKPDGAIQLT---VGGSTFNRFGLANWLYEEEILEASSAVWWS 269
Query: 651 RDGSYLAFATF 683
G Y+++ F
Sbjct: 270 PSGRYVSYLRF 280
>Z81129-6|CAB03412.1| 799|Caenorhabditis elegans Hypothetical
protein T23F1.7b protein.
Length = 799
Score = 46.8 bits (106), Expect = 1e-05
Identities = 27/117 (23%), Positives = 55/117 (47%)
Frame = +3
Query: 333 DRAYILAPSEVQQVYRYSTTAKFALYNIATATSVDIANGQRLQLCIFGGGHSLAYVLNNN 512
+R L P EV++++R + ++ Y+I + + G + +V +N
Sbjct: 150 ERLNPLLPFEVEELFRELSDSRIT-YDIGLRKEESVIQAFKWN----GKFNDFVFVESNK 204
Query: 513 VYYLPENRNQAIQLTNDGIPGVIYNGHTDWVYEEDVMYTGQATWFSRDGSYLAFATF 683
+YY + + ++G + +G DW+YEE++ A W+S G LA+A++
Sbjct: 205 IYYQSSPEEEGLTRVSNGGEHTV-DGLFDWIYEEEIFGRKDAMWWSTKGDQLAYASY 260
>Z81129-5|CAB03411.1| 779|Caenorhabditis elegans Hypothetical
protein T23F1.7a protein.
Length = 779
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/70 (27%), Positives = 36/70 (51%)
Frame = +3
Query: 474 GGGHSLAYVLNNNVYYLPENRNQAIQLTNDGIPGVIYNGHTDWVYEEDVMYTGQATWFSR 653
G + +V +N +YY + + ++G + +G DW+YEE++ A W+S
Sbjct: 172 GKFNDFVFVESNKIYYQSSPEEEGLTRVSNGGEHTV-DGLFDWIYEEEIFGRKDAMWWST 230
Query: 654 DGSYLAFATF 683
G LA+A++
Sbjct: 231 KGDQLAYASY 240
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 454 VSSYASSAVDTPSPMCLTTTFI-TYP--RTGIKLFNLRMTVSPESYTMDTPIGCTKRTLC 624
V +YA +T P+CL T + T P R IK++ + + ++Y PI R
Sbjct: 186 VLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPIKSINRLFL 245
Query: 625 IPDK 636
+P K
Sbjct: 246 VPHK 249
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Frame = +1
Query: 454 VSSYASSAVDTPSPMCLTTTFI-TYP--RTGIKLFNLRMTVSPESYTMDTPIGCTKRTLC 624
V +YA +T P+CL T + T P R IK++ + + ++Y P+ R
Sbjct: 186 VLAYAGLEAETEQPICLLTDILCTTPRGRYDIKVYPTSIALHGKTYDYKIPVKTINRLFL 245
Query: 625 IPDK 636
+P K
Sbjct: 246 VPHK 249
>Z66560-2|CAE17736.1| 127|Caenorhabditis elegans Hypothetical
protein D1053.4 protein.
Length = 127
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -1
Query: 302 KCHKIASNKYTTCQSLYIEHVNT---RFTSNCVREFCVRNPDAGKTSLRKLSCNELLQSE 132
+C+K N +++CQ Y ++T V++ C+ DA +T + K + L+
Sbjct: 32 RCNKEIGNSFSSCQGKYCYKMHTPDDTTVDGIVKKGCMNAADA-QTEVGKCT-RRPLEEG 89
Query: 131 GALA*CSCN 105
GA C CN
Sbjct: 90 GAELMCVCN 98
>Z50872-4|CAA90757.2| 498|Caenorhabditis elegans Hypothetical
protein C05D12.1 protein.
Length = 498
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 89 RVSRCGYNCIKPELLHSGGVRYRTIYATRFYR-RLDF*HRIHVHNCW 226
+VS C NC P L H G +R +T +R++R R+ H I + W
Sbjct: 208 QVSFCRTNCSSPNLYHIGEMR-QTYNVSRYWRYRIAVWHGILLMFAW 253
>Z81078-3|CAB03077.3| 1388|Caenorhabditis elegans Hypothetical
protein F36H2.3 protein.
Length = 1388
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -2
Query: 373 TC*TSLGARM*ALSADRIGLLVFKNAIRSPATSTLLVKV-CTLN 245
TC + L + LSA R G LVF N+++SP + ++ + C N
Sbjct: 339 TCLSLLDIKCPILSAPRNGELVFTNSVKSPYSLNSVISLKCDRN 382
>Z70780-2|CAA94821.1| 468|Caenorhabditis elegans Hypothetical
protein F46B6.4 protein.
Length = 468
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 348 LAPSEVQQVYRYSTTAKFALYNIATATSVDIANGQ--RLQLCI 470
L+PS+ Q++YR F YNI AT A + R+Q+ I
Sbjct: 121 LSPSQQQELYRIFEVPIFDRYNIVLATFKQFAKTEEARIQIAI 163
>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical
protein K08E7.9 protein.
Length = 1321
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +3
Query: 363 VQQVYRYSTTAKFALYNIATATSVDIANGQRLQLCIFGGGHSLAY-----VLNNN-VYYL 524
+ Q+YRY+TT + L I T +V G L + I G S A+ V+NNN +L
Sbjct: 62 IPQLYRYTTTLEKLLLFIGTLVAVITGAGLPL-MSILQGKVSQAFINEQIVINNNGSTFL 120
Query: 525 PENRN 539
P +N
Sbjct: 121 PTGQN 125
>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
protein.
Length = 1321
Score = 27.9 bits (59), Expect = 7.1
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Frame = +3
Query: 363 VQQVYRYSTTAKFALYNIATATSVDIANGQRLQLCIFGGGHSLAY-----VLNNN-VYYL 524
+ Q+YRY+TT + L I T +V G L + I G S A+ V+NNN +L
Sbjct: 62 IPQLYRYTTTLEKLLLFIGTLVAVITGAGLPL-MSILQGKVSQAFINEQIVINNNGSTFL 120
Query: 525 PENRN 539
P +N
Sbjct: 121 PTGQN 125
>AF043698-4|AAB97560.1| 275|Caenorhabditis elegans Hypothetical
protein C54G6.1a protein.
Length = 275
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 303 LNTNNPILSADRAYILAPSEVQQVYR 380
L T PI+ D + AP+E+QQ+ R
Sbjct: 204 LKTATPIIDFDAELLAAPAEIQQILR 229
>AF043698-3|AAK68268.1| 268|Caenorhabditis elegans Hypothetical
protein C54G6.1b protein.
Length = 268
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 303 LNTNNPILSADRAYILAPSEVQQVYR 380
L T PI+ D + AP+E+QQ+ R
Sbjct: 197 LKTATPIIDFDAELLAAPAEIQQILR 222
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,333,092
Number of Sequences: 27780
Number of extensions: 385088
Number of successful extensions: 1169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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