Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1f12r
         (817 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|ch...    42   8e-05
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    25   9.7  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   9.7  

>SPMIT.07 |atp6||F0-ATPase subunit 6|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 257

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 33/96 (34%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
 Frame = -2

Query: 282 IFIHIIPQGTPYILIPFXXXXXXXXXXIRPGTLAVRLTANIIAGHLLITLL-----RRTG 118
           +F   +P GTP  LIP            R  +L +RL ANIIAGHL +++L        G
Sbjct: 149 VFGLFLPSGTPTPLIPLLVLIEFVSYIARGLSLGIRLGANIIAGHLTMSILGGLIFTFMG 208

Query: 117 TN-ISFYXXXXXXXXXXXXXXLESAVAIIQSYVITI 13
            N I+F               LE  +A IQ+YV  I
Sbjct: 209 LNLITFIIGFLPITVLVAISLLEFGIAFIQAYVFAI 244


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 548 INPKSTFYYMKFHFKKN 498
           +N K  FYY K+HF  N
Sbjct: 209 VNDKGEFYYCKWHFITN 225


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 620 C*WIKNRK*VCY-HFQLKVNFFFWLNLLIRCIFFS 721
           C + KN+  +C  +FQ  +  F W++++ R + FS
Sbjct: 370 CPYGKNKTLICLLNFQSSLLSFEWISIISRALLFS 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,970,185
Number of Sequences: 5004
Number of extensions: 30221
Number of successful extensions: 67
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)