Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e24f
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    37   0.002
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    29   0.85 
SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces ...    26   6.0  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    25   7.9  

>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +2

Query: 362 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDR 469
           G++ YNF   +P   P S E + G+VRY ++ T++R
Sbjct: 273 GEYTYNFDLAIPNCFPESVEAKMGWVRYFLEATVER 308


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 362 GKHIYNFTCTLPPVLPSSFEGEHGYVRYTVKVTLDRPWKF 481
           G+++YNF   +    P S + + G V Y ++  +DR   F
Sbjct: 191 GEYVYNFELPISCTYPESIQTDMGRVYYFLETLVDRSSTF 230


>SPCC550.15c |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 463

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = -3

Query: 160 QKHIRSFHSLFVLHNMYSIDYPNRY 86
           +KH+++ HSL++    Y +D P+ +
Sbjct: 224 KKHMKASHSLYIPEREYLVDEPSLF 248


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -1

Query: 423 PSKDEGRTGGNVQVKLYMCFPCGISISFP 337
           P  +E +  G   V+LY C  CG +  FP
Sbjct: 119 PPNEEEKWNGVRNVELYQCNVCGHNQRFP 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,059
Number of Sequences: 5004
Number of extensions: 68153
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)