Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e23r
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    31   0.28 
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    30   0.48 
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.6  
SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces pombe...    27   4.5  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    27   4.5  
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   7.8  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    26   7.8  

>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
 Frame = -1

Query: 603 LKAGLQPSGDADALDHYMSTLKHGTM---AQKAEISQTKMNIQKLRKDLSKTQRLAELAR 433
           L+  +Q   +A  +D Y   LK       A+K EISQ + ++   +++L K ++  ELA+
Sbjct: 52  LRLQMQLDMNAKEVDVYEGELKKTQTFCEAEKTEISQLEQDLLVAQEELRKREQYDELAK 111

Query: 432 PAHLPPLVAKQETKMAV 382
           P     L ++ E + ++
Sbjct: 112 PIMSKGLRSRTEQQESI 128


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -1

Query: 222 NKKNNTENSTKFESASKAGIIEAESSVEGARVNDKDDDGDVSKREGDERPRT-FGPMRPP 46
           N+KNN EN+     + +A   E+ + +E +     + +  ++ R G + PRT  G   P 
Sbjct: 98  NEKNNEENNVVSSDSKEAITKESGAELESSEPASTNSNVGMTTRSGRQSPRTPIGSTTPK 157

Query: 45  DGYVIP 28
             +  P
Sbjct: 158 SSHSPP 163


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -1

Query: 210 NTENSTKFESASKAGIIEAESSVEGARVNDKDDDGDVS 97
           ++E+  + +  S+   +  ES  EG+ V+D +D GD S
Sbjct: 222 DSESEEEVDGHSEGKELAGESEEEGSNVDDVEDSGDSS 259


>SPCC569.03 |||DUF1773 family protein 4|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 396

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
 Frame = -1

Query: 570 DALDHYMSTLKHGTMAQKAEISQTKMNIQKLRKDLSKTQ-RLAEL-ARPAHLPPLVAKQE 397
           DA+   MS +K+G  + K E+++ K  +  ++ D++  +  +AE+    A +   +A  +
Sbjct: 127 DAMQTEMSVMKNGIASIKGEMAEMKGEMTVMKNDIASIKGEMAEMKGEMAVMKNDIASIK 186

Query: 396 TKMAVKVGSNSVV 358
            +MA   G  +V+
Sbjct: 187 GEMAEMKGEMTVM 199


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
            Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -1

Query: 207  TENSTKFESASKAGIIEAESSVEGARVNDKDDDGDVSKREGDE 79
            T++ST   S S     E +S+ E +  ND D+D    + + DE
Sbjct: 1224 TKDSTPLSSDSATPGFERDSTEEQSNTNDMDEDRSELEEDLDE 1266


>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 394

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/58 (27%), Positives = 24/58 (41%)
 Frame = -1

Query: 219 KKNNTENSTKFESASKAGIIEAESSVEGARVNDKDDDGDVSKREGDERPRTFGPMRPP 46
           K N  + S   ES   + I + E   EG+   + ++D DV   E         P+R P
Sbjct: 212 KPNIEKQSCSSESDRVSQISDDEEDEEGSADEEDEEDSDVELSESSLSDDEDSPLRCP 269


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 141 EGARVNDKDDDGDVSKREGDERPRTF 64
           EG+  N+K D  ++  R  D RP  F
Sbjct: 699 EGSHSNEKIDSNEIYSRHNDYRPYAF 724


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,368,341
Number of Sequences: 5004
Number of extensions: 36592
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)