Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e23r
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.89 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   8.3  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   8.3  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   8.3  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   8.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.89
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -1

Query: 840 RRRKQRDWSADDXYDSDEDT--FLDRTGHVETKRRIRME 730
           R+R+Q D    D  D DE+     D  G  E ++R++++
Sbjct: 267 RKRRQNDGEGADDRDDDEENEEEEDGRGQSEAEKRLKLD 305


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 425 TSRPLSRNRKQRWPSKSGVTALSTGRGY 342
           TSR  SR+RK+R  SK      S    Y
Sbjct: 62  TSRERSRDRKERERSKEPKIISSLSNNY 89


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 425 TSRPLSRNRKQRWPSKSGVTALSTGRGY 342
           TSR  SR+RK+R  SK      S    Y
Sbjct: 62  TSRERSRDRKERERSKEPKIISSLSNNY 89


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 425 TSRPLSRNRKQRWPSKSGVTALSTGRGY 342
           TSR  SR+RK+R  SK      S    Y
Sbjct: 62  TSRERSRDRKERERSKEPKIISSLSNNY 89


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 425 TSRPLSRNRKQRWPSKSGVTALSTGRGY 342
           TSR  SR+RK+R  SK      S    Y
Sbjct: 62  TSRERSRDRKERERSKEPKIISSLSNNY 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,755
Number of Sequences: 438
Number of extensions: 2394
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)