Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e23f
         (668 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    26   0.24 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   1.7  
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   3.0  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   3.0  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   5.2  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 26.2 bits (55), Expect = 0.24
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -2

Query: 145 YLVYVTEM*HFSLCVLYWFILFNLFMCLPSNFICIELFT 29
           Y  ++    HF LC  Y++  F + +C+   +    +FT
Sbjct: 86  YCPFIIFTVHFLLCTYYFYYAFIILLCVYYFYYAFIIFT 124



 Score = 24.2 bits (50), Expect = 0.98
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -2

Query: 160 ILNTVYLVYVTEM*HFSLCVLYWFILFNLFMCLPSNFICIELFTSFH 20
           I+ T++L++   +    LC+ Y++  F LF       +CI  F   H
Sbjct: 220 IIFTIHLLFYCVL-IILLCIYYFYYAFILFTVHLLLLVCIYYFYYMH 265



 Score = 21.4 bits (43), Expect = 6.9
 Identities = 14/67 (20%), Positives = 26/67 (38%)
 Frame = -2

Query: 232 FKFDFLFILRTRCLIFCHFKM*T*ILNTVYLVYVTEM*HFSLCVLYWFILFNLFMCLPSN 53
           F + F+ +L      +        +L  + + Y      F LC+ Y++  F +F      
Sbjct: 103 FYYAFIILLCVYYFYYAFIIFTVHLLFLLCIYYFVVPLFFLLCIYYFYCAFIIFTVHLLF 162

Query: 52  FICIELF 32
            +CI  F
Sbjct: 163 LLCIYHF 169


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +2

Query: 185 ENKTPSPQNEEKIEFKKPVLF-----GRVGKLPKKVKNESEKVIEEP 310
           E + PS ++ +   +  P+ F      + GK P+ VK E E   E+P
Sbjct: 45  EEERPSFKSRKPKNYSAPIGFVAGGVQQAGKKPENVKKEDESDEEKP 91


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 644 ISTNRTRAPLLPRTLYIVKPH 582
           I+ +  R P+ P TLY   PH
Sbjct: 319 ITASLGRVPIWPYTLYFRMPH 339


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 644 ISTNRTRAPLLPRTLYIVKPH 582
           I+ +  R P+ P TLY   PH
Sbjct: 326 ITASLGRVPIWPYTLYFRMPH 346


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -2

Query: 580 MPRDRRMCHYDI 545
           +P DR++CH +I
Sbjct: 174 LPMDRQLCHIEI 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,267
Number of Sequences: 336
Number of extensions: 3420
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17385535
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)