Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e23f
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    27   3.2  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    26   5.6  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   5.6  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    25   7.5  
SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    25   9.9  
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo...    25   9.9  

>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -2

Query: 142 LVYVTEM*HFSLCVLYWFILFN-LFMCLPSNFICIELFTSFHS 17
           ++YVT++  F L    W+IL N +F    S F+ I ++T + +
Sbjct: 714 IMYVTDLVLFFLDTYLWYILVNTVFSVARSFFLGISIWTPWRN 756


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 509 KPYH-VFGRFTNCDIIMAHPTVSRHHAV 589
           KPY+ V G F  C  ++  PTV   H +
Sbjct: 120 KPYNSVLGEFFRCKWVVTDPTVREDHTL 147


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 142 LVYVTEM*HFSLCVLYWFILFN-LFMCLPSNFICIELFTSFHS 17
           ++Y T++  F L    W+I+FN +F  L S  + I + T + +
Sbjct: 744 IMYFTDLILFFLDTYLWYIIFNTIFSVLRSFVLGISILTPWRN 786


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = -3

Query: 126 KCNIFHFAFCIGLYYLIYLCVYL 58
           +C I+++ FC  ++  +YL +Y+
Sbjct: 248 ECGIYYWHFCDVVWLFLYLTIYI 270


>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 524 FGRFTNCDIIMAHPTVSRHH 583
           FGR  +C++++  P VS  H
Sbjct: 62  FGRHKSCEVVLNGPRVSNFH 81


>SPBC13G1.08c |ash2||Ash2-trithorax family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 380 KKEGLIPIPYKEPKWSGLCPD 442
           KKE LIP  + E  W  LCPD
Sbjct: 151 KKEDLIP--FIEEHWQLLCPD 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,813
Number of Sequences: 5004
Number of extensions: 56786
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)