Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1e23f
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_1137 + 9412230-9412378,9412549-9412634,9413417-9413496,941... 91 1e-18
08_02_0208 - 14318485-14319283,14319704-14320170 50 1e-06
05_06_0284 + 26918888-26918982,26919345-26919392,26919511-269195... 36 0.022
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 36 0.039
11_01_0450 - 3487464-3487844,3487883-3488268,3488883-3489033,348... 30 1.5
03_06_0048 - 31274899-31277193 29 3.3
02_01_0777 - 5785295-5787370,5787723-5788769 29 4.4
02_05_0202 + 26708049-26709074 28 7.7
01_06_0421 + 29225157-29225831 28 7.7
>06_01_1137 +
9412230-9412378,9412549-9412634,9413417-9413496,
9413826-9413881,9414038-9414086,9414692-9414841,
9414993-9415088,9415442-9415555,9415655-9415785,
9416171-9416408,9416603-9416656,9417100-9417117,
9417906-9418722,9418797-9418846
Length = 695
Score = 90.6 bits (215), Expect = 1e-18
Identities = 46/101 (45%), Positives = 63/101 (62%)
Frame = +2
Query: 365 PPPAHKKEGLIPIPYKEPKWSGLCPDGSDYALEVIKSGIITDKVDLTGKPYHVFGRFTNC 544
PPP+ +++ PY P+WS G + LEV+K G I DK+D++ K ++FGR C
Sbjct: 7 PPPSQQQQPRPRAPYAIPEWSAA--PGHPFFLEVLKDGTIVDKLDVSRKGAYMFGRIDLC 64
Query: 545 DIIMAHPTVSRHHAVLQYKAFAEEGEPVCGWYLYDLGSTHG 667
D ++ HPT+SR HAVLQ F +GE +LYDLGSTHG
Sbjct: 65 DFVLEHPTISRFHAVLQ---FRNDGEV----FLYDLGSTHG 98
>08_02_0208 - 14318485-14319283,14319704-14320170
Length = 421
Score = 50.4 bits (115), Expect = 1e-06
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +2
Query: 407 YKEPKWSGLCPDGSDYALEVIKSGIITDKVDLTGKPYHVFGR-FTNCDIIMAHPTVSRHH 583
++ P W+ + P Y LEV+K G + D+++L K H+FGR CD ++ H +VSR H
Sbjct: 89 WQPPDWA-IEPRPGVYYLEVLKDGDVIDRINLE-KKRHIFGRQVPACDFVLDHQSVSRQH 146
Query: 584 AVLQYKAFAEEGEPVCGWYLYDLGSTHG 667
A + + Y+ DLGS HG
Sbjct: 147 AAV----VPHRNGSI---YVIDLGSVHG 167
>05_06_0284 +
26918888-26918982,26919345-26919392,26919511-26919556,
26919660-26919730,26920430-26920469
Length = 99
Score = 36.3 bits (80), Expect = 0.022
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Frame = +2
Query: 518 HVFGRFTN-CDIIMAHPTVSRHHAVLQYKAFAEEG-----EPVCGWYLYDLGSTHG 667
++FGR DI + HP+ S+ HAVLQY+ +E YL DLGST+G
Sbjct: 4 YLFGRERKVADIPIDHPSCSKQHAVLQYRLVEKEQPDGMMSKQVRPYLMDLGSTNG 59
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 35.5 bits (78), Expect = 0.039
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Frame = +2
Query: 518 HVFGRFTN-CDIIMAHPTVSRHHAVLQYKAFAEEG-----EPVCGWYLYDLGSTHG 667
++FGR DI HP+ S+ HAVLQY+ +E YL DLGST+G
Sbjct: 600 YLFGRERKVADIPTDHPSCSKQHAVLQYRLVEKEQPDGMMSKQVRPYLMDLGSTNG 655
>11_01_0450 -
3487464-3487844,3487883-3488268,3488883-3489033,
3489132-3491102,3492090-3492149,3492240-3492436,
3492678-3492963
Length = 1143
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 512 PYHVFGRFTNCDIIMAHPTVSRHH 583
P +FGR C +++ HP+VSR H
Sbjct: 53 PPVMFGRHPECHVLVDHPSVSRFH 76
>03_06_0048 - 31274899-31277193
Length = 764
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 371 PAHKKEGLIPIPYKEPKWSGLCPDGSDYALEVIKSGIITDKVDLTG 508
P++ GL P+P W G C +G+D+ +I + LTG
Sbjct: 151 PSYDDAGLGPVP---AGWKGKCEEGNDFNASACNKKLIGARFFLTG 193
>02_01_0777 - 5785295-5787370,5787723-5788769
Length = 1040
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 569 VSRHHAVLQYKAFAEEGEPVCG 634
+S+HHA++ K F E G P+ G
Sbjct: 726 ISQHHAIIMLKTFCELGAPLQG 747
>02_05_0202 + 26708049-26709074
Length = 341
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +2
Query: 161 SSLHFKMAENKTPSPQNEEKIEFKKPVLFGRVGKLPKKVKNESEKVIEEPKDE 319
+S F A+ + + EE + FKKP+ + + PK+ SE + + E
Sbjct: 53 ASTSFTAADEEEEEEEEEEDVGFKKPLSIYALRENPKRSLRVSEYAFSDRESE 105
>01_06_0421 + 29225157-29225831
Length = 224
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = -3
Query: 513 GFPVKSTLSVMMPDFITSSA*SDPSGHNP 427
GFP K T SV+ DF + PS NP
Sbjct: 50 GFPCKPTASVVSDDFFCDAIVQAPSTSNP 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,987,703
Number of Sequences: 37544
Number of extensions: 337319
Number of successful extensions: 730
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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