Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e23f
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.86 
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.1  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               24   1.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.6  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   3.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   4.6  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    22   6.1  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 10/36 (27%), Positives = 17/36 (47%)
 Frame = -3

Query: 180 ILKCKLEYLIQYI*FMLRKCNIFHFAFCIGLYYLIY 73
           +  C  +YL       +    IF F++CI +  +IY
Sbjct: 194 LTSCSFDYLTDTNEIRIFVATIFTFSYCIPMILIIY 229


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +2

Query: 194 TPSPQNEEKIEFKKPVLFGRVGKLPKKVKNESEKV 298
           T +P+  E IEF KP  +  +  L KK    S  V
Sbjct: 524 TINPERAEFIEFSKPFKYQGITILEKKPSRSSTLV 558


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/50 (24%), Positives = 22/50 (44%)
 Frame = +3

Query: 105 QSEKCYISVT*TKYTVLSIQVYILKWQKIRHRVRRMKRKSNLKSLSCSDV 254
           Q+ KCY+    TK+ +L     +   + +RH  R M+  +      C  +
Sbjct: 53  QNLKCYLKCFMTKHGILDKNAEVDVQKALRHLPRSMQDSTKKLFNKCKSI 102


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 8/31 (25%), Positives = 18/31 (58%)
 Frame = -2

Query: 154 NTVYLVYVTEM*HFSLCVLYWFILFNLFMCL 62
           NT +++Y +    +  C++  F+ +N+F  L
Sbjct: 340 NTDFIIYSSLSSFYIPCIIMVFLYYNIFKAL 370


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +2

Query: 173 FKMAENKTPSPQNEEKIEFKKPVLFGRVGKLPKKVKNESEKVIEEPKDET 322
           F  A NKT         +  K  LF ++    KKVK + + ++  PK+ T
Sbjct: 667 FIEAPNKTLPSLPSTLTKNSKQGLFSKL--FAKKVKKDKDIILNVPKEST 714


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = +3

Query: 33  NNSIQIKFEGKHINRLNSINQYRTQSEKCYISV 131
           NN+ +  +   + N  N  N Y    +K Y ++
Sbjct: 326 NNNYKYNYNNNNYNNNNYNNNYNNNCKKLYYNI 358


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 185 LPF*NVNLNT*YSIFSLCYGNVTFFTLRSVLVYT 84
           +P  N+NL    +I  +C+  + +  L  ++ YT
Sbjct: 75  VPVNNINLILLQNIIDICWITMVYSLLGIIIAYT 108


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +2

Query: 521 VFGRFTNCDIIMAHPTV 571
           +FG  T C +I+ +P +
Sbjct: 55  IFGNITTCTVIIKNPAM 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,899
Number of Sequences: 438
Number of extensions: 3996
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)