Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e20r
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    27   2.6  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   3.5  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   4.6  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    26   4.6  
SPAC823.06 |taf3||transcription factor TFIID complex subunit Taf...    26   6.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.0  
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo...    25   8.0  

>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 7/21 (33%), Positives = 15/21 (71%)
 Frame = -3

Query: 687 WEHKHTTDLPKLKELLARWSK 625
           W+H    ++P+L +L+++W K
Sbjct: 69  WQHFEVGNVPRLSQLVSKWEK 89


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -3

Query: 654 LKELLARWSKIVTKESEPTVFTLKEDGSLPDLILLNHNVSMLRPPSAAPV 505
           LK+L  R++KI  + S+P V   +   + PDL+  N  +S+    +  PV
Sbjct: 617 LKDLRERFAKIEIQASQPLVPYRETTIATPDLLAKNKELSIGFVTATLPV 666


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
 Frame = -3

Query: 210 WKEGHTGYMAVYNPSRQ-----DLHA----NLTAVPSVPGTITIQNVSPAVKLVTNYTKN 58
           W+EGHT +M +   + +     DL+A    +L AVP + G +  +N   A  + T   + 
Sbjct: 360 WQEGHTAHMTLEGATEEVHQILDLYARIYTDLLAVPVIKG-VKSENEKFAGGMFTTTVEG 418

Query: 57  YQP 49
           Y P
Sbjct: 419 YIP 421


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 660 PKLKELLARWSKIVTKESEPTVFTLKEDGSLP 565
           P LKEL+A   K+VTKE+  +     E+ SLP
Sbjct: 255 PNLKELIASSRKVVTKETASSKRKSDEE-SLP 285


>SPAC823.06 |taf3||transcription factor TFIID complex subunit
           Taf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 266 WRPRPRVTQARTYSSFVQDGK-RVTPVTW 183
           W   P+V + R  S FVQD + +V P  W
Sbjct: 93  WFNGPQVAELRRVSGFVQDSETQVKPKDW 121


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -3

Query: 543 NVSMLRPPSAA-PVPVTEDADALASR 469
           N S ++PPSAA PVP  E+ +A+ S+
Sbjct: 152 NNSNIQPPSAAPPVPGKENYNAVGSK 177


>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -3

Query: 588 LKEDGSLPDLILLNHNVSMLRPPSAAPVPVTEDADALAS 472
           L++  +LP  + L  +    +PPSAA V V  D   L +
Sbjct: 207 LQDVSTLPPSMTLEKDPKFPQPPSAAEVAVVHDGPFLVA 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,702
Number of Sequences: 5004
Number of extensions: 48959
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)