Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1e20r
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_04_0095 + 15979884-15980234 32 0.51
01_06_0310 - 28376378-28376607,28376789-28376897 31 0.67
11_01_0738 - 6218730-6220173,6221969-6223056 31 1.2
01_05_0091 + 18048595-18050559 31 1.2
01_01_0118 - 871481-872606,872795-872950,873051-873817 31 1.2
08_02_0502 + 17844775-17845092,17845528-17845634,17846039-178464... 30 1.6
02_01_0182 + 1245577-1245670,1245928-1246017,1246258-1246290,124... 30 2.1
03_04_0029 - 16610182-16611753 29 2.7
03_02_0579 - 9606317-9606892,9607571-9607799,9607902-9608011,960... 29 2.7
01_01_0103 - 773727-774737,774797-774813,774852-775078,777465-77... 29 2.7
10_08_0669 + 19742140-19742189,19742886-19742923,19744260-197444... 29 3.6
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 29 3.6
08_02_0825 - 21570628-21570715,21571436-21571812,21572364-215727... 29 4.8
06_02_0225 + 13257655-13260693 28 6.3
10_01_0360 - 3970796-3971248,3972080-3972436 28 8.3
08_02_0941 + 22829689-22830012,22830077-22830460 28 8.3
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817 28 8.3
06_01_0875 + 6707483-6709394,6709750-6709829,6710077-6710174,671... 28 8.3
01_01_0115 - 856957-858055,858479-858538,858802-859583 28 8.3
>01_04_0095 + 15979884-15980234
Length = 116
Score = 31.9 bits (69), Expect = 0.51
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = -2
Query: 172 PVPAGSPRESHCCTLRARDDNNSKRLASRQTCH-QLYEELSAGRGRAGPC 26
P P SP S CC R+R S L + H +L E + G AG C
Sbjct: 33 PCPGASPMASPCCRTRSRARTGSTSLGAVAHRHVELREGVGHGGDEAGAC 82
>01_06_0310 - 28376378-28376607,28376789-28376897
Length = 112
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 309 NLRSDASLSHGEHHVAAAPARNASENVLIVCARWKEGHTGYMAVYNPSRQDLHA 148
+L + A+ H AA P R+ ++ W E GY+ VY+ +L A
Sbjct: 6 SLLAAAAADDARHAQAAGPRRDDDHKAWLLRRAWHEAREGYVVVYDGGGNELSA 59
>11_01_0738 - 6218730-6220173,6221969-6223056
Length = 843
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -1
Query: 215 QDGKRVTPVTWRCTTRPGRISTRISLLYPPCPGR*QFKTSRQPSNLSPT 69
+DGK V C P + I++LY CP R TS+ PSN + T
Sbjct: 312 RDGKHTAYVA--CLVAP--VVAYIAILYIACPSRSPSSTSKSPSNTNTT 356
>01_05_0091 + 18048595-18050559
Length = 654
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -3
Query: 657 KLKELLARWSKIVTKESEPTVFTLKEDGSLPDLILLNHNVSML 529
++KEL+ +++ E P +E SLPD ++LN N++ L
Sbjct: 363 RVKELVKNMQTVLSHEIGPVSLNAQEKVSLPDDLVLNENLAEL 405
>01_01_0118 - 871481-872606,872795-872950,873051-873817
Length = 682
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 121 GHGGYSSEIRVEILPGRVVHRHVTGVTLFPSCTNDEYVLACVTRGRGRH 267
G GGY S + +LPG +H + + + +C +E++ T GR H
Sbjct: 366 GQGGYGSVYKGVLLPGD-LHVAIKILNGYSNCNGEEFISEVATIGRIHH 413
>08_02_0502 +
17844775-17845092,17845528-17845634,17846039-17846492,
17846623-17846694,17846804-17846925,17847079-17847294,
17847392-17847500,17847618-17847730,17847916-17848063,
17848274-17848396
Length = 593
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 61 LRIVGDKFDGWRDVLNCYRPGHGGYSSEIRVEILPGRVVHRHVTG 195
+ +VGD W+D + C G Y +EIR+ G+ ++ + G
Sbjct: 470 VELVGDFTSNWKDKVKCDHKGGSRYEAEIRLR--HGKYYYKFIAG 512
>02_01_0182 +
1245577-1245670,1245928-1246017,1246258-1246290,
1246451-1246483,1246657-1246689,1246872-1246904,
1247073-1247105,1247237-1247286
Length = 132
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 287 NDASLRRFTRSKREVSFSSAESCFIFNKGAAGRSIAN 397
N SL+ SKR + F SA SC IF G +G + N
Sbjct: 34 NIFSLKYTPFSKRGLKFGSASSCPIFGSGRSGYNSVN 70
>03_04_0029 - 16610182-16611753
Length = 523
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 649 GALGSLVEDRHQRIRADGVHAEGRWLPA--GPDTA 551
G L S D + R+ A G+ A RWLPA GP A
Sbjct: 160 GELESFSGDANHRLAAHGLRALARWLPAAVGPAAA 194
>03_02_0579 -
9606317-9606892,9607571-9607799,9607902-9608011,
9608898-9609275,9609380-9609658,9610044-9610168,
9610269-9610335,9610582-9612006
Length = 1062
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 351 LSADENDTSLLDLVNLRSDASLSHGEH-HVAAAPARNASENVLI 223
LS DEN + + + +DAS++H EH +VA A+ VL+
Sbjct: 435 LSMDENLQMIAKIAAVCNDASIAHSEHQYVATGMPTEAALKVLV 478
>01_01_0103 -
773727-774737,774797-774813,774852-775078,777465-778237
Length = 675
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +1
Query: 112 YRPGHGGYSSEIRVEILPGRVVHRHVTGVTLFPSCTNDEYVLACVTRGRGRH 267
Y G GGY S + LPG VH + + +C ++++ T GR H
Sbjct: 352 YSQGQGGYGSVYKGVFLPGD-VHVAIKMLDGNSNCNGEDFISEVATIGRIHH 402
>10_08_0669 +
19742140-19742189,19742886-19742923,19744260-19744448,
19746402-19748188
Length = 687
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = -3
Query: 525 PPSAAPVPVTEDADALASRINKTLGSWPILQLTDTNDDRELASFAMLLPAAPLLNIKQLS 346
PP A + + D DALA +++ L +L T D + A AA ++++L
Sbjct: 227 PPRAGKLQMQSDLDALAGKLDLNLRDCALLIKTGVLSDATVPPVAPAAEAAAQTDVRELL 286
Query: 345 A 343
A
Sbjct: 287 A 287
>02_04_0179 + 20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -3
Query: 678 KHTTDLPKLK-ELLARWSKIVTKESEPTVFTLKEDGSLPDLILLNHNVSMLRPPSAAPVP 502
KH TD +L+ ++ K V +E E + +K++ +PD L H V A
Sbjct: 949 KHQTDNVELQPHIIKEKEKKVKEEEEKCMAEIKKNMRIPDSTLDEHGVWKKDQKEADQKK 1008
Query: 501 VTEDADALASRINKTLG 451
E+ + + I K +G
Sbjct: 1009 AKEEEEKHMAEIKKNMG 1025
>08_02_0825 -
21570628-21570715,21571436-21571812,21572364-21572755,
21573943-21574311,21574395-21574580,21574709-21574845,
21575030-21575089,21575206-21575277,21575399-21575542,
21575702-21575773,21575928-21576060,21576157-21576247
Length = 706
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Frame = -3
Query: 573 SLPDLILLNHNVSMLRPPSAAPVPVTEDAD----ALASRINKTLGSWPILQLTDTNDDRE 406
+L ++L N+N++ PP +P + D + R+ TLG L+ N++
Sbjct: 95 NLEQVLLQNNNITGRLPPELGALPRLQTLDLSNNRFSGRVPDTLGRLSTLRYLRLNNNSL 154
Query: 405 LASFAMLLPAAPLLNIKQLS 346
+F L P L+ LS
Sbjct: 155 SGAFPSSLAKIPQLSFLDLS 174
>06_02_0225 + 13257655-13260693
Length = 1012
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -2
Query: 667 RPAEAQGALGSLVEDRHQRIRADGVHAEGRWLPAGPDTAE 548
R +A G +L + ADG H G WL PD A+
Sbjct: 374 RDKQAAGDADALASVKAATWMADGTHWPGTWLDPSPDHAK 413
>10_01_0360 - 3970796-3971248,3972080-3972436
Length = 269
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = -3
Query: 603 PTVFTLKEDGSLPDLILLNHNVSMLRPPSAAPVPVTEDADALASRINKTLGSWPILQ 433
PT+ + +P N N S L SAA +PVT D L + W + Q
Sbjct: 149 PTLAPPQPQPLMPMTAAANFNFSDLPSSSAANIPVTADLSTLFDPLPAAQPQWGLYQ 205
>08_02_0941 + 22829689-22830012,22830077-22830460
Length = 235
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -2
Query: 649 GALGSLVEDRHQRIRADGVHAEGRWLPAGPDTA 551
G L S D + + A G+ A RWLPA TA
Sbjct: 70 GELESFSGDANHFLAAHGLRALARWLPAAVGTA 102
>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
Length = 958
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 162 QDLHANLTAVPSVPGTITIQNVSPAVKL 79
QD + ++A PS+PG +QN + +V L
Sbjct: 558 QDAISQISAAPSLPGATQLQNTTSSVPL 585
>06_01_0875 +
6707483-6709394,6709750-6709829,6710077-6710174,
6710704-6710840,6710961-6711301,6711402-6711599
Length = 921
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 91 WRDVLNCYRPGHGGYSSEIRV--EILPGRVVHRHVTGVTLFPSCTN 222
W ++ CY HG + +++ E+ +V+ H+T V+L +C N
Sbjct: 436 WNALIGCYEH-HGRATKALQLFKEMRRAKVMPTHITFVSLLSACVN 480
>01_01_0115 - 856957-858055,858479-858538,858802-859583
Length = 646
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 121 GHGGYSSEIRVEILPGRVVHRHVTGVTLFPS-CTNDEYVLACVTRGRGRH 267
G GGY S + +LPG + HV L S C +E++ T GR H
Sbjct: 339 GQGGYGSVYKGVLLPG---NAHVAVKVLGNSNCNGEEFISEVSTIGRIHH 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,597,796
Number of Sequences: 37544
Number of extensions: 384446
Number of successful extensions: 1416
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1415
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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