Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e20r
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82272-2|CAB05216.1|  342|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z73973-6|CAA98268.2|  189|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z71185-13|CAD54125.1|  189|Caenorhabditis elegans Hypothetical p...    27   9.9  
Z66561-2|CAA91460.1|  331|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U40935-3|AAA81689.1|  334|Caenorhabditis elegans Rfc (dna replic...    27   9.9  
AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical...    27   9.9  

>Z82272-2|CAB05216.1|  342|Caenorhabditis elegans Hypothetical
           protein F55G11.5 protein.
          Length = 342

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 281 CDNDASLRRFTRSKREVSFSSAESCFIFNKGAAGRS 388
           C+   +L +  RSK+  SFSS  S  +FN  A+G S
Sbjct: 194 CNYVGNLYQMYRSKKPYSFSSEGSIVVFNLAASGNS 229


>Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical
           protein M01A8.2b protein.
          Length = 869

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -1

Query: 173 TRPGR-ISTRISLLYPPCPGR*QFKTSRQPSNLSPTIRRTISR 48
           T+P + I +R+SLL PP P   Q K +++   ++ T RRTI++
Sbjct: 320 TKPKKEIKSRVSLLPPPAPKAPQ-KENKEGGEMTETPRRTITK 361


>Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical
           protein M01A8.2a protein.
          Length = 937

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = -1

Query: 173 TRPGR-ISTRISLLYPPCPGR*QFKTSRQPSNLSPTIRRTISR 48
           T+P + I +R+SLL PP P   Q K +++   ++ T RRTI++
Sbjct: 388 TKPKKEIKSRVSLLPPPAPKAPQ-KENKEGGEMTETPRRTITK 429


>Z73973-6|CAA98268.2|  189|Caenorhabditis elegans Hypothetical
           protein F25D1.3 protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 687 WEHKHTTDLPKLKELLARWSKI 622
           W  KH  + P LKE LA W +I
Sbjct: 33  WTDKHCEEPPSLKEDLATWMQI 54


>Z71185-13|CAD54125.1|  189|Caenorhabditis elegans Hypothetical
           protein F25D1.3 protein.
          Length = 189

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 687 WEHKHTTDLPKLKELLARWSKI 622
           W  KH  + P LKE LA W +I
Sbjct: 33  WTDKHCEEPPSLKEDLATWMQI 54


>Z66561-2|CAA91460.1|  331|Caenorhabditis elegans Hypothetical
           protein F08G12.2 protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -3

Query: 219 CARWKEGHTGYMAVYNPSRQDLHANLTAVPSVPGTITIQNVSPAVKLVTNYTKNYQ 52
           CAR    HT ++   +PSR+ +   L A  S  GT  + ++    + V  YT  YQ
Sbjct: 115 CARRFRTHTDFVNAVHPSRRGV--TLVASASDDGTCRVHDMR-TKEPVKTYTNRYQ 167


>Z54284-3|CAA91063.1|  666|Caenorhabditis elegans Hypothetical
           protein D2085.3 protein.
          Length = 666

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 690 FWEHKHTTDLPKLKELLARWSKIVTKESEPTVFTLK 583
           F + KH  D  K+KEL+ +W  +     + +  +LK
Sbjct: 537 FMKLKHNQDFNKMKELIVKWQPLFLNYYKTSAESLK 572


>U40935-3|AAA81689.1|  334|Caenorhabditis elegans Rfc (dna
           replication factor) familyprotein 4 protein.
          Length = 334

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -3

Query: 681 HKHTTDLPKLKELLARWSKIVTKESEPTVFTLKEDGS-LPDLILLNHNVSMLRPP 520
           H H  D+ KLK ++      +T+E++  +  + ED S     IL+ + VS L PP
Sbjct: 110 HSHREDVLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPP 164


>AF022973-10|AAC25795.2| 1143|Caenorhabditis elegans Hypothetical
           protein F25G6.2 protein.
          Length = 1143

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 435 QLTDTNDDRELASFAMLLPAAPLLNIKQLSADENDTSLLDLVNLRS 298
           Q TD      LA ++ L+P+ PLL I   S     T++   V LRS
Sbjct: 785 QWTDEMYKNSLAVYSTLMPSDPLLLIPLASVYAQSTNVFKRVVLRS 830


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,831,954
Number of Sequences: 27780
Number of extensions: 292503
Number of successful extensions: 954
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)