Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e20r
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    26   0.40 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.9  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   8.6  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   8.6  
AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.        21   8.6  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 601 DGVHAEGRWLPAGP 560
           D +H E R+LPAGP
Sbjct: 4   DSIHWEARYLPAGP 17


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 615 KESEPTVFTLKEDGSLP 565
           K  EPTV  + +DGS P
Sbjct: 613 KYEEPTVGEISQDGSSP 629


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = -3

Query: 528 RPPSAAPVPVTEDADALASRINKTLGSWPILQLTDTN 418
           R P+A+P P  + A           GS  +LQ   +N
Sbjct: 739 RSPNASPSPAEQCASTTTITARSPQGSQGLLQCATSN 775


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 350 FQLTKTTPLF*IW 312
           F L K +PLF IW
Sbjct: 303 FNLVKISPLFTIW 315


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -3

Query: 531 LRPPSAAPVPVTEDADALASRIN 463
           +RPPS   +PV  D +   + IN
Sbjct: 1   IRPPSKQGLPVLVDFNIFVADIN 23


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 596 TVGSDSLVTIFDQRAKSSLS 655
           T+G  SL+T+  Q AKS  S
Sbjct: 278 TLGVTSLLTLSTQHAKSQAS 297


>AB178034-1|BAD27112.1|   76|Apis mellifera apiceropsin protein.
          Length = 76

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -1

Query: 350 FQLTKTTPLF*IW 312
           F L K +PLF IW
Sbjct: 53  FNLVKISPLFTIW 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,698
Number of Sequences: 438
Number of extensions: 3840
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)