Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1e20f
(704 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax pr... 26 0.26
AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax pr... 26 0.26
AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax pr... 26 0.26
AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax pr... 26 0.26
AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax pr... 26 0.26
AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein. 26 0.26
AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax pr... 26 0.26
AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduce... 26 0.26
AY453651-1|AAR89057.1| 199|Tribolium castaneum serrate protein. 24 1.4
AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain tran... 24 1.4
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr... 24 1.4
AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless pr... 24 1.4
DQ855499-1|ABH88186.1| 124|Tribolium castaneum chemosensory pro... 22 5.6
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.8
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.8
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.8
>AY055847-1|AAL23667.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 26.2 bits (55), Expect = 0.26
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 518 PGCACSPGLLQSLYAHPSAARPNPGHGTNSVPWSDWTWSMP 640
P C P + HP AA P PGHG D+T P
Sbjct: 40 PACYSPPQVAPQYPQHPYAA-PAPGHGLQPT-MGDYTQLQP 78
>AY055846-1|AAL26542.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 26.2 bits (55), Expect = 0.26
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 518 PGCACSPGLLQSLYAHPSAARPNPGHGTNSVPWSDWTWSMP 640
P C P + HP AA P PGHG D+T P
Sbjct: 40 PACYSPPQVAPQYPQHPYAA-PAPGHGLQPT-MGDYTQLQP 78
>AY055845-1|AAL23670.2| 230|Tribolium castaneum cephalothorax
protein.
Length = 230
Score = 26.2 bits (55), Expect = 0.26
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 518 PGCACSPGLLQSLYAHPSAARPNPGHGTNSVPWSDWTWSMP 640
P C P + HP AA P PGHG D+T P
Sbjct: 40 PACYSPPQVAPQYPQHPYAA-PAPGHGLQPT-MGDYTQLQP 78
>AF426396-1|AAL27023.2| 312|Tribolium castaneum cephalothorax
protein.
Length = 312
Score = 26.2 bits (55), Expect = 0.26
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 518 PGCACSPGLLQSLYAHPSAARPNPGHGTNSVPWSDWTWSMP 640
P C P + HP AA P PGHG D+T P
Sbjct: 40 PACYSPPQVAPQYPQHPYAA-PAPGHGLQPT-MGDYTQLQP 78
>AF426395-1|AAL27022.2| 297|Tribolium castaneum cephalothorax
protein.
Length = 297
Score = 26.2 bits (55), Expect = 0.26
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 518 PGCACSPGLLQSLYAHPSAARPNPGHGTNSVPWSDWTWSMP 640
P C P + HP AA P PGHG D+T P
Sbjct: 40 PACYSPPQVAPQYPQHPYAA-PAPGHGLQPT-MGDYTQLQP 78
>AF321227-2|AAK16422.1| 312|Tribolium castaneum Scr protein.
Length = 312
Score = 26.2 bits (55), Expect = 0.26
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 518 PGCACSPGLLQSLYAHPSAARPNPGHGTNSVPWSDWTWSMP 640
P C P + HP AA P PGHG D+T P
Sbjct: 40 PACYSPPQVAPQYPQHPYAA-PAPGHGLQPT-MGDYTQLQP 78
>AF261823-1|AAG13010.1| 157|Tribolium castaneum cephalothorax
protein.
Length = 157
Score = 26.2 bits (55), Expect = 0.26
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 518 PGCACSPGLLQSLYAHPSAARPNPGHGTNSVPWSDWTWSMP 640
P C P + HP AA P PGHG D+T P
Sbjct: 40 PACYSPPQVAPQYPQHPYAA-PAPGHGLQPT-MGDYTQLQP 78
>AF227628-1|AAF42868.1| 312|Tribolium castaneum sex combs reduced
Scr protein.
Length = 312
Score = 26.2 bits (55), Expect = 0.26
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = +2
Query: 518 PGCACSPGLLQSLYAHPSAARPNPGHGTNSVPWSDWTWSMP 640
P C P + HP AA P PGHG D+T P
Sbjct: 40 PACYSPPQVAPQYPQHPYAA-PAPGHGLQPT-MGDYTQLQP 78
>AY453651-1|AAR89057.1| 199|Tribolium castaneum serrate protein.
Length = 199
Score = 23.8 bits (49), Expect = 1.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 497 CSCCSGWPGCACS 535
C+C +GW G CS
Sbjct: 130 CNCKNGWKGKTCS 142
Score = 23.0 bits (47), Expect = 2.4
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Frame = +2
Query: 473 SG*TCVGR-----CSCCSGWPGCACS 535
+G TCV + C C GW G C+
Sbjct: 79 NGGTCVDKINAFQCICKEGWEGALCN 104
>AY043292-1|AAK96031.1| 323|Tribolium castaneum homeodomain
transcription factor Prothoraxlessprotein.
Length = 323
Score = 23.8 bits (49), Expect = 1.4
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3
Query: 537 GEHAQPGHPEQHEQRPTQVH 478
G H Q HP+ H+ Q H
Sbjct: 168 GHHMQEQHPQHHQPHHQQQH 187
>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
protein.
Length = 1156
Score = 23.8 bits (49), Expect = 1.4
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -1
Query: 572 HLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGS-SAYFSTSS 441
H G+ + +PAS T +TN D++ G+ S+ F + S
Sbjct: 926 HAGSPCRNSASPASSDRSGTPRSTNGDRKPGGSLGALSSMFDSLS 970
>AF228509-1|AAF69136.1| 325|Tribolium castaneum prothoraxless
protein.
Length = 325
Score = 23.8 bits (49), Expect = 1.4
Identities = 8/20 (40%), Positives = 10/20 (50%)
Frame = -3
Query: 537 GEHAQPGHPEQHEQRPTQVH 478
G H Q HP+ H+ Q H
Sbjct: 170 GHHMQEQHPQHHQPHHQQQH 189
>DQ855499-1|ABH88186.1| 124|Tribolium castaneum chemosensory
protein 13 protein.
Length = 124
Score = 21.8 bits (44), Expect = 5.6
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
Frame = -3
Query: 549 CNSPGEHAQPGHPEQHEQRPTQV---HPEGIVSILQYLLSRHP 430
C GE + P+ + + H EGI ++ YL+ + P
Sbjct: 51 CTPSGEELKKDIPDALKNECAKCNDKHKEGIRKVIHYLVKQKP 93
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.8
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +1
Query: 475 WVNLRWSLFVLFW 513
W+NL W+ + L W
Sbjct: 55 WLNLEWNDYNLKW 67
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.8
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +1
Query: 475 WVNLRWSLFVLFW 513
W+NL W+ + L W
Sbjct: 55 WLNLEWNDYNLKW 67
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.8
Identities = 6/13 (46%), Positives = 9/13 (69%)
Frame = +1
Query: 475 WVNLRWSLFVLFW 513
W+NL W+ + L W
Sbjct: 55 WLNLEWNDYNLKW 67
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,952
Number of Sequences: 336
Number of extensions: 3945
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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