Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1e20f
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 31 0.16
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 29 0.49
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 2.0
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 26 4.6
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 6.0
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 26 6.0
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 6.0
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 6.0
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi... 25 8.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 25 8.0
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe... 25 8.0
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 8.0
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 25 8.0
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 31.1 bits (67), Expect = 0.16
Identities = 28/89 (31%), Positives = 37/89 (41%)
Frame = -1
Query: 620 PTRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSS 441
PT PSS S T+TA S T T + T SS Y+S SS
Sbjct: 464 PTSAPSSVSSFTSSNSSY-TTTLTA-------SNTTVTFTGTGTGSATATSSSPYYSNSS 515
Query: 440 LVIPVNCRLLASSSIFASPFLWSPTTYFA 354
+++P S S F+S SPT+ F+
Sbjct: 516 IIVPTTVSTSGSVSSFSSS--PSPTSSFS 542
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 29.5 bits (63), Expect = 0.49
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = -1
Query: 617 TRGPSSYHVLGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTS 444
TR SSY + S + + ++ +P+S S+++ ++ +S + K SS+ S+S
Sbjct: 139 TRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSS 196
Score = 25.4 bits (53), Expect = 8.0
Identities = 21/77 (27%), Positives = 37/77 (48%)
Frame = -1
Query: 569 LGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPVNCRLLASSSIFA 390
L A + I+ +S+ T ++T+ + SS+YF TSS P + +SSS +
Sbjct: 108 LQACSTCTISTSSLSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSS 167
Query: 389 SPFLWSPTTYFASDMST 339
S S ++ +S S+
Sbjct: 168 SSSKSSSSSKSSSSSSS 184
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/36 (47%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 255 EVRFGRPEFCIRFWYSLVGCNVF-ILFHLPSINRET 151
EV G P W+SL GC VF LF P N ET
Sbjct: 867 EVILGNPGIKASDWWSL-GCVVFEFLFGYPPFNAET 901
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = -1
Query: 260 LPRFVLDDRNSVSDSGIAL*VATCSSSFTCPPSIERRFFRGSD 132
L F D +SD AL V T +++FTCP S + +G D
Sbjct: 298 LGNFSSIDMPDLSDVKGALTVETKATNFTCPWSNDDSVIKGDD 340
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/53 (24%), Positives = 22/53 (41%)
Frame = -1
Query: 590 LGSGGPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVI 432
+G+G P + A+ P + S +T N+T S T ST + +
Sbjct: 150 VGNGNPSCVGIAVLAVLPQPISSSSTYNSTTSSYHNSTSTPPPTITSTKASTV 202
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 502 VLFWVAWLCMLAGAIAVI 555
VL W AWLC +G + +
Sbjct: 278 VLIWFAWLCFNSGTLLTV 295
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = -1
Query: 578 GPHLGARTMTAIAPASMHSQATQNNTNSDQRKFTQKGSSAYFSTSSLVIPVNCRLLASSS 399
GP +G+R + + + + T + + +QK S +Y + SL +P LL ++
Sbjct: 523 GPSIGSRNQSTPSTLAPNVAETDALVSENTGAASQKTSKSYKTNDSLKVPPLVPLLIGTT 582
Query: 398 IF 393
F
Sbjct: 583 RF 584
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -2
Query: 133 TSLIVYYT-LKTSFSLRESSPFTINHDLQ 50
TS YYT L T FSL ES PF +Q
Sbjct: 607 TSPNTYYTVLDTGFSLSESVPFATKEWIQ 635
>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 817
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 412 NKRQFTGMTREEVLKYADDPFWVNLRWSLFVL 507
N G+TREE+ YA+ + WS++ +
Sbjct: 318 NNNPDDGLTREEMAPYAERVLVYPVNWSVYTM 349
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 166 HQSRDGFSVAPTSLIVYYTLKTSFSLRESSPFTIN 62
H S + P+S + TL +S +SS FT++
Sbjct: 475 HSSASSLPITPSSYLSNTTLHSSVQSSQSSQFTVS 509
>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 377
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +2
Query: 599 TNSVPWSDW-TWSMPSNHKIYNRIW 670
T+S+P D W PS ++YN +W
Sbjct: 210 TSSIPKVDGKNWEYPSPQQMYNAMW 234
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 627 VQSDQGTEFVPCPGFGRAALGC-AYNDCNSPGEHAQPGHPE 508
VQS QG P PG ++ YND NS G H+ E
Sbjct: 247 VQSVQGRPLAPIPGRRPLSISSDLYNDSNS-GSHSNDDSDE 286
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 418 RQFTGMTREEVLKYADDPFWVNLRWSLFVLFWVAWLCMLAGAIAVIV 558
R + T EE + + +L W++ ++ W WL + A + +IV
Sbjct: 467 RVVSDSTNEETGQLIRETHDYSLGWTMTIVTWAIWLFLTALNLLLIV 513
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,927
Number of Sequences: 5004
Number of extensions: 62768
Number of successful extensions: 211
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -