Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e20f
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    26   0.40 
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.1  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   4.9  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    22   4.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.5  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = +1

Query: 511 WVAWLCMLAGAIAVIVRAPKCGPPEPRTWY-ELGPLVGLDLVD 636
           WV   C     I VI++ P CGP     ++ +L PL  L   D
Sbjct: 9   WVGGFCHSIIQIPVIIQLPFCGPNVIDHYFRDLQPLFKLACTD 51


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +2

Query: 500 SCCSGWPGCA-CSPGLLQSLYAHPSA 574
           S CS  P  A  S G L  +Y HPSA
Sbjct: 118 STCSSHPTAAFISYGTLFFIYVHPSA 143


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 458 YFSTSSLVIPVNCRLLASSSIFASPFLWSPTTYFASDMST 339
           Y+    L       +L  S  FA   +W P T+FA+D ++
Sbjct: 91  YWKDERLAFSQEEEVLTLSGDFAEK-IWVPDTFFANDKNS 129


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 442 EEVLKYADDPFWVNLRWSLFVLF-WVAWLCMLAGAIAVIVRAP 567
           E+  K  +D  W  +   L  LF W+  L +L G   +I++AP
Sbjct: 502 EDSTKVKED--WKYVAMVLDRLFLWIFTLAVLVGTAGIILQAP 542


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +1

Query: 442 EEVLKYADDPFWVNLRWSLFVLF-WVAWLCMLAGAIAVIVRAP 567
           E+  K  +D  W  +   L  LF W+  L +L G   +I++AP
Sbjct: 502 EDSTKVKED--WKYVAMVLDRLFLWIFTLAVLVGTAGIILQAP 542


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
 Frame = -1

Query: 569 LGARTMTAIAPASMHSQATQNNTNSDQRKFT---QKGSSAYFSTSSLVIPVNCRLLASSS 399
           LG  T     P    S  + NN     R  T    K S A+   SS +  +  R      
Sbjct: 451 LGIDTPKKDGPTKSWSDESLNNALDALRTGTISANKASKAFGIPSSTLYKIARR---EGI 507

Query: 398 IFASPFLWSPTTYFASDM 345
             A+PF  SPTT+  +D+
Sbjct: 508 RLAAPFNASPTTWSPADL 525


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/21 (28%), Positives = 13/21 (61%)
 Frame = -1

Query: 395 FASPFLWSPTTYFASDMSTRV 333
           F    +W+PT Y +++ S+ +
Sbjct: 92  FVRDLIWTPTVYVSNEPSSAI 112


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +2

Query: 611 PWSDWTWSMPSN 646
           P+ DWTW+   N
Sbjct: 104 PYPDWTWAKNEN 115


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 14/45 (31%), Positives = 19/45 (42%)
 Frame = -3

Query: 225 IRFWYSLVGCNVFILFHLPSINRETVFPWLRHR*LCTTLLKPVFH 91
           I  WYS  G    I   + SIN  T    +    + T +L  +FH
Sbjct: 282 IIMWYSPFGIMCLIAGKIMSINNLTATAQMLGLYMVTVILGLLFH 326


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +1

Query: 502 VLFWVAWLCMLAGAIAVIVRAP 567
           +  WV  L   AG + +I +AP
Sbjct: 484 LFLWVFTLACTAGTLGIIFQAP 505


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,342
Number of Sequences: 438
Number of extensions: 4310
Number of successful extensions: 17
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)