Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e18r
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    32   0.12 
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    29   1.2  
SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase Nak1|Schizosacch...    29   1.2  
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces...    26   6.2  
SPAC20H4.03c |tfs1||transcription elongation factor TFIIS |Schiz...    26   6.2  
SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family Sec14|Schi...    26   8.2  

>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 5/65 (7%)
 Frame = -2

Query: 219 NQLALGTAFSTGVSVINSAISNLEWGNAEATDIYNFLLARS-----SSTTVTSSFILMIT 55
           N+ A  TAF    ++  SA++++E+GN++   +  F+   S     SST + S+ I+ I+
Sbjct: 790 NEKARHTAFQLLFNIAKSAVNSVEFGNSKPERVEKFVSVISAGLAGSSTHMISATIIAIS 849

Query: 54  ALVVK 40
           ++V++
Sbjct: 850 SIVME 854


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 481 VSSTSESSQHNDHVGCVLGSIVPLEE-EVVVTGVALTNTNTVHVAPRIHWDQIG 639
           V     +   ND +  + G I+  ++ +V +  +    +NT+   P+++WD IG
Sbjct: 606 VDRIKRTGYDNDSI-ILSGPIITEQDVDVSINRIRKEKSNTIFTVPKVNWDDIG 658


>SPBC17F3.02 |nak1|orb3, mor4|PAK-related kinase
           Nak1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 652

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -3

Query: 800 LET*SITWDTTNAQPTPHQPFSTECRS*TSPATSGIPAASATVFRNGDSLG 648
           LE+ S T   ++   TP +PF+++ R+   P + G PA       N DSLG
Sbjct: 550 LESASSTPKISSCSSTP-KPFNSKLRAHLPPLSIGSPAVQPLANDNYDSLG 599


>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
 Frame = -3

Query: 506 CELSLVLETQTHCNIT---CSSQCTTIGSASTTVRTPLVMLYKATGRICLSFSTSCIKTL 336
           C    +    T+ NI      S+CT I  +  TV     ML   TGR+ +   T   K +
Sbjct: 386 CSFESLTTVTTNTNIWWVWAESRCTEIPESKRTVFPNCTMLIDKTGRLIILQQTVPQKPV 445

Query: 335 RLFAPATEVK 306
            L A + + K
Sbjct: 446 ALTASSNKRK 455


>SPAC20H4.03c |tfs1||transcription elongation factor TFIIS
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +2

Query: 35  NILTTNAVIIRMKDEVTVVDELLANRKL*MSVASALPHSRLLMAELMTE 181
           NI T   ++ R+K+EV   +ELL   +L + V     H    + E   E
Sbjct: 21  NIETIINIMTRLKNEVVATEELLKETRLGLVVGKLRSHPNEKVGEQARE 69


>SPAC3H8.10 |spo20|sec14|sec14 cytosolic factor family
           Sec14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 286

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 813 TLDLXRNVINHLGYNERATDSTSTILNRMQILNLACNL 700
           TLD  R  +  LGY ER  D+T     R +  NL  +L
Sbjct: 31  TLDSMRLELQKLGYTERLDDATLLRFLRARKFNLQQSL 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,558,496
Number of Sequences: 5004
Number of extensions: 73492
Number of successful extensions: 197
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)