Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e18f
         (641 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.1  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.1  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   2.1  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    23   2.8  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   6.5  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.6  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   8.6  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   8.6  

>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 118 NLEWMDYSTNVAESAY 165
           NLEW DY+    ES Y
Sbjct: 57  NLEWNDYNLKWNESEY 72


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 118 NLEWMDYSTNVAESAY 165
           NLEW DY+    ES Y
Sbjct: 57  NLEWNDYNLKWNESEY 72


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 118 NLEWMDYSTNVAESAY 165
           NLEW DY+    ES Y
Sbjct: 57  NLEWNDYNLKWNESEY 72


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 162 LPTPRHYPA*NYESGPRCLLKRS*V*WYR*HGY*GSSEQH 281
           +P   + P    E G R ++      WY  HG+ G++E H
Sbjct: 462 VPASDNLPTLLLELGYRIIVSTKDA-WYLDHGFWGTTEYH 500


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -1

Query: 116 DLSSSMGTARPVPIRIHSTVGSSIVPIARSSP 21
           D     GT  P+   IH T+G S   I    P
Sbjct: 363 DFRGVSGTKYPILKAIHQTLGGSSNEIVEPVP 394


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 118 NLEWMDYSTNVAESAY 165
           +LEW DY+    ES Y
Sbjct: 57  SLEWNDYNLKWNESEY 72


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 118 NLEWMDYSTNVAESAY 165
           +LEW DY+    ES Y
Sbjct: 57  SLEWNDYNLKWNESEY 72


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 551 PHNSSHSMLGRPSRASTSPSLN 616
           PH SSH  +  P      P LN
Sbjct: 241 PHLSSHPAIVTPGPKQELPDLN 262


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 551 PHNSSHSMLGRPSRASTSPSLN 616
           PH SSH  +  P      P LN
Sbjct: 133 PHLSSHPAIVTPGPKQELPDLN 154


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,708
Number of Sequences: 336
Number of extensions: 3489
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)