Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1e18f
(641 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 55 1e-08
SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyce... 29 0.75
SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyc... 26 4.0
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 26 4.0
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 26 5.3
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 26 5.3
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 25 7.0
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 7.0
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 25 9.3
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 54.8 bits (126), Expect = 1e-08
Identities = 29/82 (35%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Frame = +1
Query: 400 ELLLINLAQPIAAGNYTV-TVRYRGQINTNPVDRGFYRGYYYVNN-QLRYYATTQFQPFH 573
E +++ + A + V T+ + +I++ GFYR Y ++ +Y ATTQ +P
Sbjct: 90 ERIVLQFPSTVPANSVAVLTLPFTARISSGM--EGFYRSSYVDSDGNTKYLATTQMEPTS 147
Query: 574 ARKAFPCFDEPQFKSIYIISIT 639
AR+AFPC+DEP K+ + I IT
Sbjct: 148 ARRAFPCWDEPALKATFTIDIT 169
>SPBP8B7.17c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.75
Identities = 18/73 (24%), Positives = 37/73 (50%)
Frame = -3
Query: 600 VEAREGLPSMEWLELCGSIISELIVDVIVTSVKTSINRIGIDLTAIPHCDGVITSSDWLG 421
+ A +G P + W+E C + ++ ++ S++T N I L+ + H G++ S
Sbjct: 434 ISASDGYPYVAWVEHCKDKSATSHIETLLESLET--NSQIISLSKVQHLLGILEKS---- 487
Query: 420 EVDQQELVMSVNS 382
+D + LV+ +S
Sbjct: 488 -LDFERLVLDTSS 499
>SPBC4C3.10c |||20S proteasome component beta 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -3
Query: 528 VDVIVTSVKTSINRIGIDLTAIPHCDGVITSSD 430
++V + ++K R+G +TA+ + DGVI ++D
Sbjct: 9 MNVDINAIKKGEIRMGTTITALRYKDGVILAAD 41
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 26.2 bits (55), Expect = 4.0
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 527 TISSDIMLP-HNSSHSMLGRPSRASTSPSLNQYTSFQSP 640
T SS I +P N+ HS L P R S S++ +SP
Sbjct: 137 TSSSSIPIPIKNAGHSNLDHPIRPSLQSSISSNRIIKSP 175
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 544 YATTQFQPFHARKAFPCFDEPQFK 615
Y ++ Q HAR PC D P K
Sbjct: 132 YVFSECQAIHARSFIPCQDTPSVK 155
>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 5.3
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Frame = +1
Query: 355 VGLKFPDPFTIDRHYELLLIN-LAQPIAAGNYTVTVRYRGQINTNPVDRGFYRGYYYVNN 531
+G +FPD + + + + L + I A +RYR + PV G Y+ +
Sbjct: 98 LGPQFPDTLVLGMEIRMQVSDYLKEKIQA------LRYRAD-HEEPVPGG-YKNISVLRM 149
Query: 532 QLRYYATTQFQPFHARKAFPCFDEPQFKS 618
+ + F+ K F CF +P FK+
Sbjct: 150 NCQKFLPNFFEKGQLSKMFFCFPDPHFKA 178
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = +1
Query: 121 LEWMDYSTNVAESA---YRLLDTIQPRTMRVDLDV 216
LEW+DY +++A Y + T P DLD+
Sbjct: 187 LEWLDYKVGTSDNAPGNYVAVGTFDPEIEIWDLDI 221
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 7.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 447 VITSSDWLGEVDQQELVMSVNSERIREF 364
V ++ ++ GE D VMSVNSE + F
Sbjct: 450 VFSAPNYCGEFDNWGAVMSVNSELLCSF 477
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.0 bits (52), Expect = 9.3
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Frame = -1
Query: 326 TPWIETTFWWNTICSMLLARTSISMLTIPSNLA----SFKKTSRSTL 198
+PW+ WN S + R SI L + S + SF K + TL
Sbjct: 298 SPWLNEQNVWNVAESFAVLRDSIRRLALRSKSSKDDLSFDKDDKDTL 344
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,721,105
Number of Sequences: 5004
Number of extensions: 56943
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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