Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1e18f
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 70 1e-12
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 61 6e-10
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 58 6e-09
09_03_0038 + 11790075-11790302,11790397-11790542,11790915-117910... 55 4e-08
04_01_0416 - 5504415-5504590,5509032-5509116,5509190-5509322,550... 30 1.8
03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551 28 5.5
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 28 5.5
05_01_0168 + 1162459-1162785,1163609-1163719,1163853-1163969,116... 28 7.2
03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670... 28 7.2
10_02_0143 + 5795028-5795108,5795197-5795403,5795878-5795976,579... 27 9.6
03_02_0488 - 8824980-8825267,8825364-8827775 27 9.6
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 70.1 bits (164), Expect = 1e-12
Identities = 30/79 (37%), Positives = 49/79 (62%)
Frame = +1
Query: 400 ELLLINLAQPIAAGNYTVTVRYRGQINTNPVDRGFYRGYYYVNNQLRYYATTQFQPFHAR 579
E+L+I + + G T+ + ++G +N GFYR Y +N + + A TQF+P AR
Sbjct: 93 EILIIRFNEVLPVGEGTLVIAFKGTLNDKM--HGFYRSVYELNGEKKNMAVTQFEPADAR 150
Query: 580 KAFPCFDEPQFKSIYIISI 636
+ FPC+DEP FK+I+ I++
Sbjct: 151 RCFPCWDEPSFKAIFKITL 169
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 61.3 bits (142), Expect = 6e-10
Identities = 28/89 (31%), Positives = 48/89 (53%)
Frame = +1
Query: 370 PDPFTIDRHYELLLINLAQPIAAGNYTVTVRYRGQINTNPVDRGFYRGYYYVNNQLRYYA 549
P ++ E+L++ A + G + +R+ G +N RGFYR Y + + A
Sbjct: 74 PAEVSVFEEDEILVLEFAGELPLGEGVLAMRFNGTLNDQM--RGFYRSKYEYKGETKNMA 131
Query: 550 TTQFQPFHARKAFPCFDEPQFKSIYIISI 636
TQF+ AR+ FPC+DEP FK+ + +++
Sbjct: 132 VTQFESVDARRCFPCWDEPSFKAKFKLTL 160
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 58.0 bits (134), Expect = 6e-09
Identities = 27/79 (34%), Positives = 44/79 (55%)
Frame = +1
Query: 400 ELLLINLAQPIAAGNYTVTVRYRGQINTNPVDRGFYRGYYYVNNQLRYYATTQFQPFHAR 579
E+++I Q + G + + + G +N RGFYR Y + R A TQF+ AR
Sbjct: 80 EIVVIGFGQDLPIGEGVLKMDFTGTLNDQM--RGFYRSKYEYKGESRNMAVTQFEAADAR 137
Query: 580 KAFPCFDEPQFKSIYIISI 636
+ FPC+DEP FK+ + +++
Sbjct: 138 RCFPCWDEPAFKAKFKLTL 156
>09_03_0038 +
11790075-11790302,11790397-11790542,11790915-11791017,
11791148-11791334,11791466-11791559,11791702-11791855,
11792189-11792305,11792695-11792808,11793629-11793811,
11794209-11794494,11794592-11794713,11794746-11794802,
11794803-11794900,11795036-11795213,11795355-11795455,
11795530-11795629,11795751-11795828,11796785-11796862,
11796956-11797138
Length = 868
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/79 (31%), Positives = 43/79 (54%)
Frame = +1
Query: 400 ELLLINLAQPIAAGNYTVTVRYRGQINTNPVDRGFYRGYYYVNNQLRYYATTQFQPFHAR 579
E+L++ + G + + + G +N RGFYR Y + + A TQF+ AR
Sbjct: 90 EILVLEFDGELPLGEGVLAMDFNGTLNDQM--RGFYRSKYEYKGETKNMAVTQFEAVDAR 147
Query: 580 KAFPCFDEPQFKSIYIISI 636
+ FPC+DEP FK+ + +++
Sbjct: 148 RCFPCWDEPAFKAKFKLTL 166
>04_01_0416 -
5504415-5504590,5509032-5509116,5509190-5509322,
5509426-5510312
Length = 426
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -1
Query: 128 HSRLDLSSSMGTARPVPIRIHSTVGSSIVPIARSSP 21
H RLD S + P P R S+ GSS P + P
Sbjct: 37 HHRLDRSKFLPLIHPTPARFISSTGSSFPPYSEPPP 72
>03_02_0471 + 8734292-8734788,8735168-8735654,8735766-8736551
Length = 589
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 606 GLVEAREGLPSMEWLELCGSIISELIVDVIVTSVKT 499
GL++ G PS++ LEL G SE + V V +K+
Sbjct: 484 GLLQLSTGCPSLQKLELRGCFFSERALAVAVLQLKS 519
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 28.3 bits (60), Expect = 5.5
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 110 SSSMGTARPVPIRIH--STVGSSIVPIARSSPPHDQL 6
SSS A P R H S+ ++P+ R+SPPH Q+
Sbjct: 200 SSSSSPAHRHPRRPHWSSSAAQGLLPLLRASPPHLQV 236
>05_01_0168 +
1162459-1162785,1163609-1163719,1163853-1163969,
1164082-1164240,1164663-1164797,1165116-1165268,
1165358-1165479,1165599-1166541,1166677-1166728,
1166873-1167963,1168058-1168384,1168479-1168559,
1168649-1168717,1168809-1168937,1169038-1169121,
1169210-1169275
Length = 1321
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Frame = -1
Query: 296 NTIC-SMLLARTSISMLTIPSNLASFKKTSRSTLIVLGWIVSRSR 165
++IC S ++ +I L+ PS+L +KT + ++ GW+ ++R
Sbjct: 342 SSICYSCVVVIRNIVELSTPSSLVEVQKTVNLSSLLAGWLARKNR 386
>03_06_0470 +
34164873-34165856,34166335-34166568,34166680-34167006,
34168426-34168716
Length = 611
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 544 YATTQFQPFHARKAFPCFDEP 606
+ +Q Q HAR FPC D P
Sbjct: 125 FVFSQCQSIHARSVFPCHDTP 145
>10_02_0143 +
5795028-5795108,5795197-5795403,5795878-5795976,
5796136-5796224,5797876-5797992,5798262-5798367,
5798522-5798606,5798699-5798808,5799335-5799465,
5799686-5799782,5800310-5800603
Length = 471
Score = 27.5 bits (58), Expect = 9.6
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 52 LPTVLCILIGTGLAVPMDELRSNLEWMDYSTNVAESAYRL-LDTIQPRTMRVDLDVFLNE 228
LP C L G + S L ++ ++AE L LD I ++R LD+ L+E
Sbjct: 258 LPAEECSLEGVAGLLLFAGSVSALAYLGPKESIAEVISDLKLDIIT--SLRSRLDIILDE 315
Query: 229 ARFDGIVSMDIEVLASNIEQIVFHQ 303
A D + L+ Q+VFH+
Sbjct: 316 ADDDSTTNNLENSLSQKATQVVFHE 340
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 551 PHNSSHSML-GRPSRASTSPSLNQYTSFQSP 640
P N+S S++ PS++S SPS S QSP
Sbjct: 148 PSNTSRSLIFSSPSQSSASPSSKSLESNQSP 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,782,356
Number of Sequences: 37544
Number of extensions: 412836
Number of successful extensions: 1190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1190
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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