Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1e18f
(641 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61949-2|AAB03152.1| 884|Caenorhabditis elegans Puromycin-sensi... 73 2e-13
U61949-1|AAY44009.1| 948|Caenorhabditis elegans Puromycin-sensi... 73 2e-13
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr... 58 4e-09
AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical ... 52 4e-07
Z81543-6|CAB04428.2| 1082|Caenorhabditis elegans Hypothetical pr... 48 4e-06
AL132876-39|CAL49440.1| 1082|Caenorhabditis elegans Hypothetical... 48 4e-06
Z69794-2|CAA93681.1| 786|Caenorhabditis elegans Hypothetical pr... 46 2e-05
Z77669-5|CAK12563.1| 976|Caenorhabditis elegans Hypothetical pr... 44 9e-05
Z77669-4|CAB01242.1| 988|Caenorhabditis elegans Hypothetical pr... 44 9e-05
U61944-6|ABP49529.1| 529|Caenorhabditis elegans Hypothetical pr... 40 0.002
Z69794-3|CAA93680.1| 747|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical... 37 0.014
AF036701-2|AAB88369.2| 625|Caenorhabditis elegans Hypothetical ... 33 0.13
CU457741-11|CAM36352.1| 609|Caenorhabditis elegans Hypothetical... 32 0.30
AF068201-1|AAC70927.1| 609|Caenorhabditis elegans aminopeptidas... 32 0.30
AF068200-1|AAC72891.1| 609|Caenorhabditis elegans aminopeptidas... 32 0.30
BX677430-1|CAI79176.1| 340|Caenorhabditis elegans Hypothetical ... 32 0.40
U41546-6|AAC48223.1| 798|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z75711-4|CAB00030.1| 134|Caenorhabditis elegans Hypothetical pr... 29 2.8
CU457741-13|CAM36354.1| 608|Caenorhabditis elegans Hypothetical... 29 2.8
Z69664-5|CAE17882.2| 360|Caenorhabditis elegans Hypothetical pr... 29 3.7
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ... 29 3.7
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 28 4.9
L23646-14|AAN84801.2| 517|Caenorhabditis elegans C. elegans RET... 28 4.9
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 28 4.9
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 28 4.9
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF003145-9|AAT68904.1| 585|Caenorhabditis elegans Hypothetical ... 27 8.6
AF003145-8|AAB57721.2| 700|Caenorhabditis elegans Hypothetical ... 27 8.6
>U61949-2|AAB03152.1| 884|Caenorhabditis elegans
Puromycin-sensitive aminopeptidaseprotein 1, isoform a
protein.
Length = 884
Score = 72.5 bits (170), Expect = 2e-13
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +1
Query: 166 RLLDTIQPRTMRVDLDVFLNEARFDGIVSMDIEVLASNIEQIVFHQNVVSIQGVNLVTAR 345
RL +P V L LN+ FDG ++D+ + + + + H + IQ V+L+T
Sbjct: 15 RLPTFAEPTHYNVRLSPCLNQFSFDGHATIDVTIKEAT-DVLKVHAQSLLIQSVSLITQP 73
Query: 346 GDPVGLKFPDPFTIDRHYELLLINLAQPIAAGNYTVTVRYRGQINTNPVDRGFYRGYYYV 525
GD K + + D +L I L + + ++ G++N RGFYR Y
Sbjct: 74 GD--ASKSLET-SYDDKLNILTIKLPTTMQPQKVQLDFKFVGELNDKM--RGFYRSQYKD 128
Query: 526 NNQL-RYYATTQFQPFHARKAFPCFDEPQFKSIYIISI 636
N ++ A+TQF+ +AR AFPCFDEP +K+ + +++
Sbjct: 129 KNGTEKFLASTQFESTYARYAFPCFDEPIYKATFDVTL 166
>U61949-1|AAY44009.1| 948|Caenorhabditis elegans
Puromycin-sensitive aminopeptidaseprotein 1, isoform b
protein.
Length = 948
Score = 72.5 bits (170), Expect = 2e-13
Identities = 48/158 (30%), Positives = 80/158 (50%), Gaps = 1/158 (0%)
Frame = +1
Query: 166 RLLDTIQPRTMRVDLDVFLNEARFDGIVSMDIEVLASNIEQIVFHQNVVSIQGVNLVTAR 345
RL +P V L LN+ FDG ++D+ + + + + H + IQ V+L+T
Sbjct: 79 RLPTFAEPTHYNVRLSPCLNQFSFDGHATIDVTIKEAT-DVLKVHAQSLLIQSVSLITQP 137
Query: 346 GDPVGLKFPDPFTIDRHYELLLINLAQPIAAGNYTVTVRYRGQINTNPVDRGFYRGYYYV 525
GD K + + D +L I L + + ++ G++N RGFYR Y
Sbjct: 138 GD--ASKSLET-SYDDKLNILTIKLPTTMQPQKVQLDFKFVGELNDKM--RGFYRSQYKD 192
Query: 526 NNQL-RYYATTQFQPFHARKAFPCFDEPQFKSIYIISI 636
N ++ A+TQF+ +AR AFPCFDEP +K+ + +++
Sbjct: 193 KNGTEKFLASTQFESTYARYAFPCFDEPIYKATFDVTL 230
>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
protein T16G12.1 protein.
Length = 1890
Score = 58.4 bits (135), Expect = 4e-09
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 1/135 (0%)
Frame = +1
Query: 235 FDGIVSMDIEVLASNIEQIVFHQNVVSIQGVNLVTARGDPVGLKFPDPFTIDRHYELLLI 414
FDG S+ +E L ++ ++ + + IQ +V G V + D +L LI
Sbjct: 113 FDGRASIQVEALVAS-DRFILNAYNFKIQSYKVVDIDGTVVPINSISQD--DTTQQLSLI 169
Query: 415 NLAQPIAAGN-YTVTVRYRGQINTNPVDRGFYRGYYYVNNQLRYYATTQFQPFHARKAFP 591
A + AG Y + Y G IN +Y Y Y T +PF ARK FP
Sbjct: 170 TNANGVVAGQIYNIEFVYTGIINPYTDGGVYYTSYNDPQGNTHYMIATHMEPFSARKVFP 229
Query: 592 CFDEPQFKSIYIISI 636
DEP +K+ + I++
Sbjct: 230 SLDEPSYKAKFTITV 244
Score = 38.3 bits (85), Expect = 0.005
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +1
Query: 445 YTVTVRYRGQINTNPVDRGFYRGYYY--VNNQLRYYATTQFQPFH-ARKAFPCFDEPQFK 615
Y++ + Y G I NP D G Y +NN+ + TT F+ AR PC+DEP +K
Sbjct: 1103 YSLFIEYTGFIFQNP-DEGDASNTYLGGLNNRKGWIFTTDFEGGPGARSLLPCWDEPSYK 1161
Query: 616 SIYIISI 636
+ +S+
Sbjct: 1162 GQFEVSV 1168
>AL032618-1|CAB63366.1| 1045|Caenorhabditis elegans Hypothetical
protein Y42A5A.1 protein.
Length = 1045
Score = 52.0 bits (119), Expect = 4e-07
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Frame = +1
Query: 385 IDRHYELLL-INLAQPIAAG-NYTVTVRYRGQINTNPVDRGFYRGYYYVNNQLRYYATTQ 558
+ R Y +L +NL + G NYT+ V ++ IN N + G + Y N+ RY TQ
Sbjct: 229 VGRQYSQILDLNLETDMIHGMNYTLDVAFKSAINLN-LAYGLFAAPYTFENETRYVVATQ 287
Query: 559 FQPFHARKAFPCFDEPQFKS 618
Q AR FPC D P K+
Sbjct: 288 LQISEARTVFPCIDVPDMKA 307
>Z81543-6|CAB04428.2| 1082|Caenorhabditis elegans Hypothetical
protein F49B2.6 protein.
Length = 1082
Score = 48.4 bits (110), Expect = 4e-06
Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = +1
Query: 142 TNVAESAYRLLDTIQPRTMRVDLDVFLNEARFDGIV--SMDIEVLASNIEQIVFHQNVVS 315
TN+ + RL T +P +D D+ L+ +G V S+ I +L N +++ +++
Sbjct: 191 TNITWYSSRLPRTAEP----IDYDLTLHPNLTNGEVEASVSIRILIKNDTKLL----ILN 242
Query: 316 IQGVNLVTARGDPVGLKFPDPFTIDRHYELLLINLAQPIAAGNYTV-TVRYRGQINTNPV 492
+ + + + G K F LA+ + G++ V T+ Y Q+ ++ +
Sbjct: 243 AENLEMKSFDITKKGAKVKADFVKCAVMTQWAWKLAKRLHKGDHIVLTIYYSAQMKSD-L 301
Query: 493 DRGFYRGYYYVNNQLRYYATTQFQPFHARKAFPCFDEPQFKSIYIISI 636
++ + + + A TQF+P ARK PCFDEP FK+ + ++I
Sbjct: 302 QGLYFSTHLGTDGKKTKSAATQFEPTFARKMLPCFDEPNFKATFQVAI 349
>AL132876-39|CAL49440.1| 1082|Caenorhabditis elegans Hypothetical
protein F49B2.6 protein.
Length = 1082
Score = 48.4 bits (110), Expect = 4e-06
Identities = 42/168 (25%), Positives = 80/168 (47%), Gaps = 3/168 (1%)
Frame = +1
Query: 142 TNVAESAYRLLDTIQPRTMRVDLDVFLNEARFDGIV--SMDIEVLASNIEQIVFHQNVVS 315
TN+ + RL T +P +D D+ L+ +G V S+ I +L N +++ +++
Sbjct: 191 TNITWYSSRLPRTAEP----IDYDLTLHPNLTNGEVEASVSIRILIKNDTKLL----ILN 242
Query: 316 IQGVNLVTARGDPVGLKFPDPFTIDRHYELLLINLAQPIAAGNYTV-TVRYRGQINTNPV 492
+ + + + G K F LA+ + G++ V T+ Y Q+ ++ +
Sbjct: 243 AENLEMKSFDITKKGAKVKADFVKCAVMTQWAWKLAKRLHKGDHIVLTIYYSAQMKSD-L 301
Query: 493 DRGFYRGYYYVNNQLRYYATTQFQPFHARKAFPCFDEPQFKSIYIISI 636
++ + + + A TQF+P ARK PCFDEP FK+ + ++I
Sbjct: 302 QGLYFSTHLGTDGKKTKSAATQFEPTFARKMLPCFDEPNFKATFQVAI 349
>Z69794-2|CAA93681.1| 786|Caenorhabditis elegans Hypothetical
protein R03G8.4 protein.
Length = 786
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Frame = +1
Query: 499 GFYRGYYY-VNNQLRYYATTQFQPFHARKAFPCFDEPQFKSIYIISI 636
G+YR +N Y A TQF+P AR PCFDEP+FK+I+ +++
Sbjct: 142 GYYRTISPGLNETTMYNAVTQFEPTAARFMVPCFDEPEFKAIWHVTV 188
>Z77669-5|CAK12563.1| 976|Caenorhabditis elegans Hypothetical
protein T07F10.1b protein.
Length = 976
Score = 44.0 bits (99), Expect = 9e-05
Identities = 41/196 (20%), Positives = 89/196 (45%), Gaps = 16/196 (8%)
Frame = +1
Query: 97 PMDELRS-NLEWMDYSTNVAESAYRLLDTIQPRTMRVDLDVFL---------NEARFDGI 246
P DE+ S N+ N++ S RL ++ P + ++ + +L N F+G
Sbjct: 49 PHDEIESENVPAAKPEDNISASELRLPTSVSPISYQLTVKTYLPGYGYTADKNNLTFEGQ 108
Query: 247 VSMDIEVLASNIEQIVFHQNVVSIQGVNL----VTARGDPVGLKFPDPFTIDRHYELLLI 414
V +++ + S I+++ + ++ + + G + D + +E +
Sbjct: 109 VLIELNITKS-IKKVSLNSKDLNYTEEFIKKSSILVNGKSIAFTLDDKQST---HEKIFF 164
Query: 415 NLAQPIA-AGNYTVTVRYRGQINTNPVDRGFYRGYYYVNN-QLRYYATTQFQPFHARKAF 588
NL + + + T+ V + + T+ G Y+ Y + + + A TQ +P +AR+
Sbjct: 165 NLDETVEPTTSATLKVAFGAPLRTDM--SGLYQTTYTNSKGESKMAAVTQMEPVYARRMV 222
Query: 589 PCFDEPQFKSIYIISI 636
PCFDEP +K+ + +++
Sbjct: 223 PCFDEPAYKATWTVTV 238
>Z77669-4|CAB01242.1| 988|Caenorhabditis elegans Hypothetical
protein T07F10.1a protein.
Length = 988
Score = 44.0 bits (99), Expect = 9e-05
Identities = 41/196 (20%), Positives = 89/196 (45%), Gaps = 16/196 (8%)
Frame = +1
Query: 97 PMDELRS-NLEWMDYSTNVAESAYRLLDTIQPRTMRVDLDVFL---------NEARFDGI 246
P DE+ S N+ N++ S RL ++ P + ++ + +L N F+G
Sbjct: 61 PHDEIESENVPAAKPEDNISASELRLPTSVSPISYQLTVKTYLPGYGYTADKNNLTFEGQ 120
Query: 247 VSMDIEVLASNIEQIVFHQNVVSIQGVNL----VTARGDPVGLKFPDPFTIDRHYELLLI 414
V +++ + S I+++ + ++ + + G + D + +E +
Sbjct: 121 VLIELNITKS-IKKVSLNSKDLNYTEEFIKKSSILVNGKSIAFTLDDKQST---HEKIFF 176
Query: 415 NLAQPIA-AGNYTVTVRYRGQINTNPVDRGFYRGYYYVNN-QLRYYATTQFQPFHARKAF 588
NL + + + T+ V + + T+ G Y+ Y + + + A TQ +P +AR+
Sbjct: 177 NLDETVEPTTSATLKVAFGAPLRTDM--SGLYQTTYTNSKGESKMAAVTQMEPVYARRMV 234
Query: 589 PCFDEPQFKSIYIISI 636
PCFDEP +K+ + +++
Sbjct: 235 PCFDEPAYKATWTVTV 250
>U61944-6|ABP49529.1| 529|Caenorhabditis elegans Hypothetical
protein T12E12.6 protein.
Length = 529
Score = 39.9 bits (89), Expect = 0.002
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +1
Query: 529 NQLRYYATTQFQPFHARKAFPCFDEPQFKSIYIISI 636
N L Y TT QP HAR+ FPC D P K+++ +SI
Sbjct: 18 NPLLY--TTHLQPNHARRLFPCIDHPAVKALFRLSI 51
>Z69794-3|CAA93680.1| 747|Caenorhabditis elegans Hypothetical
protein R03G8.6 protein.
Length = 747
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/139 (20%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Frame = +1
Query: 223 NEARFDGIVSMDIEVLASNIEQIVFHQNVVSIQGVNLVTARGDPVGLKFPDPFTIDRHYE 402
N+ F+G V++ +++ + +++V H + ++I T + D + + + +
Sbjct: 59 NKITFEGNVNILLDIKETT-DKLVLHSSSLNIISA---TFQSDEQNVSISH-WNVQTESQ 113
Query: 403 LLLINLAQPIAAGNYT-VTVRYRGQINTNPVDRGFYRGYYYVNNQLRYYATTQFQPFHAR 579
L L + + + + ++G++ T+ + F + + TQF+ AR
Sbjct: 114 FLTFYLNNTVKVQSSAGIQINFQGKVRTDGLGL-FATNSTREDGTVMTNFATQFETIFAR 172
Query: 580 KAFPCFDEPQFKSIYIISI 636
PCFDEP+FK+ + +S+
Sbjct: 173 NMIPCFDEPEFKATWNVSL 191
>AC025724-10|AAG23372.2| 1073|Caenorhabditis elegans Hypothetical
protein Y67D8C.9 protein.
Length = 1073
Score = 36.7 bits (81), Expect = 0.014
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 550 TTQFQPFHARKAFPCFDEPQFKSIYIISI 636
TT+F+P AR FPC+DEP K+ + IS+
Sbjct: 239 TTKFEPTLARAFFPCWDEPGVKATFNISV 267
>AF036701-2|AAB88369.2| 625|Caenorhabditis elegans Hypothetical
protein ZC416.6 protein.
Length = 625
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 544 YATTQFQPFHARKAFPCFDEPQFKSIYIISIT 639
Y +Q Q HAR PC D P KS Y +T
Sbjct: 137 YLFSQCQAIHARSIVPCMDTPSVKSTYEAEVT 168
>CU457741-11|CAM36352.1| 609|Caenorhabditis elegans Hypothetical
protein C42C1.11a protein.
Length = 609
Score = 32.3 bits (70), Expect = 0.30
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Frame = +1
Query: 241 GIVSMDIEVLASNIEQIVFHQNVVSIQGVNLVTARGDPVGLKFPDPFTIDRHYEL--LLI 414
G VS+ ++V + E+IV +S+Q V L G+P F T++ + L L+
Sbjct: 38 GDVSITLDV-KQDTERIVLDTRDLSVQSVAL-NLNGEPKKAGF----TLEDNQALGQKLV 91
Query: 415 NLAQPIAAGNYTVT-VRYRGQINTNPVDRGFYRGYYYVNNQLRYYATTQFQPFHARKAFP 591
+ + +G+ V ++Y N + + +++ Y +Q Q +AR P
Sbjct: 92 ITTESLKSGDRPVLEIKYESSNNAAALQ---FLTAEQTTDRVAPYLFSQCQAINARSIVP 148
Query: 592 CFDEPQFKSIY 624
C D P KS Y
Sbjct: 149 CMDTPSVKSTY 159
>AF068201-1|AAC70927.1| 609|Caenorhabditis elegans aminopeptidase-1
protein.
Length = 609
Score = 32.3 bits (70), Expect = 0.30
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Frame = +1
Query: 241 GIVSMDIEVLASNIEQIVFHQNVVSIQGVNLVTARGDPVGLKFPDPFTIDRHYEL--LLI 414
G VS+ ++V + E+IV +S+Q V L G+P F T++ + L L+
Sbjct: 38 GDVSITLDV-KQDTERIVLDTRDLSVQSVAL-NLNGEPKKAGF----TLEDNQALGQKLV 91
Query: 415 NLAQPIAAGNYTVT-VRYRGQINTNPVDRGFYRGYYYVNNQLRYYATTQFQPFHARKAFP 591
+ + +G+ V ++Y N + + +++ Y +Q Q +AR P
Sbjct: 92 ITTESLKSGDRPVLEIKYESSNNAAALQ---FLTAEQTTDRVAPYLFSQCQAINARSIVP 148
Query: 592 CFDEPQFKSIY 624
C D P KS Y
Sbjct: 149 CMDTPSVKSTY 159
>AF068200-1|AAC72891.1| 609|Caenorhabditis elegans aminopeptidase-1
protein.
Length = 609
Score = 32.3 bits (70), Expect = 0.30
Identities = 33/131 (25%), Positives = 58/131 (44%), Gaps = 3/131 (2%)
Frame = +1
Query: 241 GIVSMDIEVLASNIEQIVFHQNVVSIQGVNLVTARGDPVGLKFPDPFTIDRHYEL--LLI 414
G VS+ ++V + E+IV +S+Q V L G+P F T++ + L L+
Sbjct: 38 GDVSITLDV-KQDTERIVLDTRDLSVQSVAL-NLNGEPKKAGF----TLEDNQALGQKLV 91
Query: 415 NLAQPIAAGNYTVT-VRYRGQINTNPVDRGFYRGYYYVNNQLRYYATTQFQPFHARKAFP 591
+ + +G+ V ++Y N + + +++ Y +Q Q +AR P
Sbjct: 92 ITTESLKSGDRPVLEIKYESSNNAAALQ---FLTAEQTTDRVAPYLFSQCQAINARSIVP 148
Query: 592 CFDEPQFKSIY 624
C D P KS Y
Sbjct: 149 CMDTPSVKSTY 159
>BX677430-1|CAI79176.1| 340|Caenorhabditis elegans Hypothetical
protein VB0395L.1 protein.
Length = 340
Score = 31.9 bits (69), Expect = 0.40
Identities = 31/137 (22%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Frame = +1
Query: 250 SMDIEVLASNI-EQIVFHQN-VVSIQGVNLVTARGDPVGLKFPDPFTIDRHYEL-LLINL 420
S+ ++ +A +I +Q+ FH++ V I ++L A G + P D+ + I L
Sbjct: 83 SLQMDFVARDITQQLFFHRSDKVKINSISLEDANGT---MTAPTAGAYDKSTGVQAYIPL 139
Query: 421 AQPIAAGNYTVTVRYRGQINTNPVDRGFYRGYYYV--NNQLRY---YATTQFQPFHARKA 585
A + +Y + + ++G++++ + G R Y N +RY + + R
Sbjct: 140 ANLTSQESYVLRIDFQGELDS---ETGSPRNLQYSLPNGTIRYSIVFGNSVTSSSGLRYL 196
Query: 586 FPCFDEPQFKSIYIISI 636
PC D P F +++ +I
Sbjct: 197 MPCLDSPDFPAVFNFNI 213
>U41546-6|AAC48223.1| 798|Caenorhabditis elegans Hypothetical
protein T25B6.2 protein.
Length = 798
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/57 (24%), Positives = 32/57 (56%)
Frame = +2
Query: 461 GIAVKSIPILLIEVFTEVTITSTISSDIMLPHNSSHSMLGRPSRASTSPSLNQYTSF 631
GIA+ S+ + +I + T+T+T++++ + + + + P +TSPS Q ++
Sbjct: 18 GIAIGSLVLNIIILGNVNTLTTTVNNNPVYHYTPAPQVNSTPGTVNTSPSYTQAANY 74
>Z75711-4|CAB00030.1| 134|Caenorhabditis elegans Hypothetical
protein K02B12.6 protein.
Length = 134
Score = 29.1 bits (62), Expect = 2.8
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = +1
Query: 388 DRHYELLLINLAQPIAAGNYTVTVRYRGQINTNPVDRGFYRGYYYVNNQLRYYATTQFQP 567
D HYE N PIA+ ++ +Y G N Y YY ++Q YY +
Sbjct: 66 DSHYEP---NYYNPIASYYHSYMPKYHGGHNDYYTKYNQYTPYYGGSHQQNYYEQPKHDD 122
Query: 568 FH 573
+H
Sbjct: 123 YH 124
>CU457741-13|CAM36354.1| 608|Caenorhabditis elegans Hypothetical
protein C42C1.11c protein.
Length = 608
Score = 29.1 bits (62), Expect = 2.8
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 544 YATTQFQPFHARKAFPCFDEPQFKSIY 624
Y +Q Q +AR PC D P KS Y
Sbjct: 132 YLFSQCQAINARSIVPCMDTPSVKSTY 158
>Z69664-5|CAE17882.2| 360|Caenorhabditis elegans Hypothetical
protein K04D7.6 protein.
Length = 360
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -1
Query: 185 WIVSRSR*ADSATLVL*SIHSRLDLSSSMGTARPVPIRIHSTVGSSIVPIA-RSSPPHDQ 9
W +S++ AT+++ + +SS + RP+PI S++ S +PI R P H +
Sbjct: 278 WSISKTTTTAEATIIV------TEPTSSSSSNRPIPIVSQSSIPESSIPIPNRIDPEHQE 331
>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
protein Y76B12C.7 protein.
Length = 1454
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 4/84 (4%)
Frame = +1
Query: 265 VLASNIEQIVFHQNVVSIQGVNLVTARGDPVGLKFPDPFTIDRHYELLLINLAQPIAAGN 444
V +I + FH+N I + + DP D +D +YE ++ L +PI
Sbjct: 155 VYGKHIAILPFHENSKRIHSYVIPLKQIDPRLDNIADMVFLDGYYEPTILFLYEPIQTTP 214
Query: 445 YTVTVRYRGQ----INTNPVDRGF 504
VRY ++ N VDR F
Sbjct: 215 GRACVRYDTMCIMGVSVNIVDRQF 238
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 338 VTKFTPWIETTFWWNTICSMLLARTSISMLTIPSNLASFKKTSRSTLIVLGWIVSRSR*A 159
V FT +E WN + + + T I ++ SN+ + + L+ I+ + R
Sbjct: 2110 VIPFTIDVELVDCWNRLIAKISEETKILVV---SNMTPDELEDHALLVEFTSILQKCRRV 2166
Query: 158 DSATLVL*SIHSRLD 114
D L + S+H RL+
Sbjct: 2167 DDGYLEIISLHDRLE 2181
>L23646-14|AAN84801.2| 517|Caenorhabditis elegans C. elegans RETR-1
protein, isoformc protein.
Length = 517
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 338 VTKFTPWIETTFWWNTICSMLLARTSISMLTIPSNLASFKKTSRSTLIVLGWIVSRSR*A 159
V FT +E WN + + + T I ++ SN+ + + L+ I+ + R
Sbjct: 355 VIPFTIDVELVDCWNRLIAKISEETKILVV---SNMTPDELEDHALLVEFTSILQKCRRV 411
Query: 158 DSATLVL*SIHSRLD 114
D L + S+H RL+
Sbjct: 412 DDGYLEIISLHDRLE 426
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 338 VTKFTPWIETTFWWNTICSMLLARTSISMLTIPSNLASFKKTSRSTLIVLGWIVSRSR*A 159
V FT +E WN + + + T I ++ SN+ + + L+ I+ + R
Sbjct: 2013 VIPFTIDVELVDCWNRLIAKISEETKILVV---SNMTPDELEDHALLVEFTSILQKCRRV 2069
Query: 158 DSATLVL*SIHSRLD 114
D L + S+H RL+
Sbjct: 2070 DDGYLEIISLHDRLE 2084
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/75 (25%), Positives = 34/75 (45%)
Frame = -1
Query: 338 VTKFTPWIETTFWWNTICSMLLARTSISMLTIPSNLASFKKTSRSTLIVLGWIVSRSR*A 159
V FT +E WN + + + T I ++ SN+ + + L+ I+ + R
Sbjct: 2024 VIPFTIDVELVDCWNRLIAKISEETKILVV---SNMTPDELEDHALLVEFTSILQKCRRV 2080
Query: 158 DSATLVL*SIHSRLD 114
D L + S+H RL+
Sbjct: 2081 DDGYLEIISLHDRLE 2095
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 119 LDLSSSMGTARPVPIRIHS-TVGSSIVPIARSSPPH 15
LDL+ S T PV I + TV +S+VP+ + PH
Sbjct: 1177 LDLTESAPTGLPVSIVTAAPTVQASVVPLGTTPQPH 1212
>Z71177-6|CAA94872.2| 1090|Caenorhabditis elegans Hypothetical
protein AC3.5 protein.
Length = 1090
Score = 27.5 bits (58), Expect = 8.6
Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 388 DRHYELLLINLAQPIAAGNYTVT-VRYRGQINTNPVDRGFYRGYYYVNNQLRYYATTQFQ 564
D + E + + L Q + G+ V + + +++ N G + Y Y N++ + + Q
Sbjct: 275 DENLEKVTLTLDQELKKGSTVVLKIPFTSKVSNN---NGL-KEYKYKNSEGKEQSMFTTQ 330
Query: 565 PFHA--RKAFPCFDEPQFKSIYIISI 636
P ++ R FP FD+ FK+ I++
Sbjct: 331 PSYSYLRHVFPSFDQEAFKAPAAITL 356
>AF003145-9|AAT68904.1| 585|Caenorhabditis elegans Hypothetical
protein B0414.8b protein.
Length = 585
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 220 LNEARFDGI-VSMDIEVLASNIEQIVFHQNVVSIQGVNLVTARGDPVGLKFPDPF 381
LNE R I D+ LAS IEQ+ HQ ++ + L TA PD F
Sbjct: 356 LNEVRKALINEEKDLSALASKIEQVFVHQVKTALANLLLFTASDVTFANLPPDEF 410
>AF003145-8|AAB57721.2| 700|Caenorhabditis elegans Hypothetical
protein B0414.8a protein.
Length = 700
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 220 LNEARFDGI-VSMDIEVLASNIEQIVFHQNVVSIQGVNLVTARGDPVGLKFPDPF 381
LNE R I D+ LAS IEQ+ HQ ++ + L TA PD F
Sbjct: 356 LNEVRKALINEEKDLSALASKIEQVFVHQVKTALANLLLFTASDVTFANLPPDEF 410
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,082,131
Number of Sequences: 27780
Number of extensions: 324814
Number of successful extensions: 846
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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