Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e15r
         (851 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0523 + 9112577-9112608,9112626-9113251,9113696-9113747,911...    33   0.29 
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267...    33   0.38 
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155...    31   1.5  
04_03_1018 + 21753634-21753640,21754282-21754315,21754413-217544...    30   2.7  
07_01_0672 - 5041742-5043175                                           29   3.6  
07_03_0474 + 18534071-18534238,18534349-18534445,18534992-185351...    29   6.2  

>03_02_0523 +
           9112577-9112608,9112626-9113251,9113696-9113747,
           9114713-9114782
          Length = 259

 Score = 33.1 bits (72), Expect = 0.29
 Identities = 22/114 (19%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
 Frame = -3

Query: 849 NAQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTSGDYN 670
           ++  +S  ++ D F +      +  ++WD+  + + H G      +  +++A+   G Y+
Sbjct: 117 SSSSSSNNISSDAFTSSRSNGTKDTDSWDMQHLEYDHPGLMLLPYDDDIEEAYDVLGQYD 176

Query: 669 VIVV-DWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHV 511
           V++  D +S  +   +  V+      + I   L  L    N +H+V  N+  H+
Sbjct: 177 VVMKNDLASGDVDGSAAGVIDEKLYSNGIEDLL-ILPRGQNSIHVVYANIVCHL 229


>11_06_0023 -
           19325966-19326046,19326132-19326248,19326635-19326703,
           19326922-19327119,19327388-19327591,19327688-19327828,
           19328416-19328625,19329330-19329944
          Length = 544

 Score = 32.7 bits (71), Expect = 0.38
 Identities = 18/79 (22%), Positives = 37/79 (46%)
 Frame = -3

Query: 705 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFN 526
           ++D    + D NV    +   +L   + A +A   +   IA +LKN KL ++++ +    
Sbjct: 379 MQDVLFLANDDNV--ARFFDSTLEHGADAKLAANWIMGDIAAYLKNEKLSIDEIKLTPLE 436

Query: 525 LGAHVAGVTGRNLEGKVAR 469
           L   +A +    + GK+ +
Sbjct: 437 LSELIASIRNGTISGKIGK 455


>05_04_0226 +
           19215091-19215172,19215281-19215394,19215508-19215590,
           19215682-19215820,19215862-19216191,19216414-19216693,
           19216795-19216956,19217134-19217349,19217458-19217495,
           19217597-19217760,19217833-19217946,19218042-19218083,
           19218180-19218983
          Length = 855

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 718 RRRSSATVTVYYYDNIPIIVKARSSIVSSGKVVFGECNRISL 843
           R R S   T+   +NIP+++   SS   + K V G+  R+SL
Sbjct: 637 RLRLSKAPTIQNKENIPVMLNKGSSGADTSKAVAGKARRVSL 678


>04_03_1018 +
           21753634-21753640,21754282-21754315,21754413-21754432,
           21754485-21755782
          Length = 452

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -3

Query: 372 GSGVNKNGLGVAIGHIDFFVNGRLVQPGCTNNLCSHNRAYEVFAAT 235
           G  ++   +G  +GH+ +  +G+    GC   + S   A E  AA+
Sbjct: 320 GGAIHHGAVGALLGHLSWAASGKCASGGCAGAVPSALAAVEALAAS 365


>07_01_0672 - 5041742-5043175
          Length = 477

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = -3

Query: 846 AQRNSITLTEDHFPTGNDTAARFNNNWDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNV 667
           A++  I    D F  G D  AR    W    ++HG  GT  +T+   + +      DY++
Sbjct: 217 AKKKDIMDDLDAFRDGKDYYARIGKAWKRGYLLHGPPGTGKSTMIAAMANYL----DYDI 272

Query: 666 IVVDWSSFSLST 631
             V+ +S + +T
Sbjct: 273 YDVELTSVATNT 284


>07_03_0474 +
           18534071-18534238,18534349-18534445,18534992-18535122,
           18535191-18535286,18535459-18535464,18535521-18535688,
           18535892-18536020,18536613-18536673,18536928-18537031,
           18537137-18537220,18538433-18538461,18538506-18538617,
           18539200-18539313,18539767-18539832,18540237-18540309,
           18540396-18540482,18540710-18540764,18540869-18540940,
           18541039-18541101,18541177-18541294,18541377-18541451
          Length = 635

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = -3

Query: 507 GVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDAQYVE-VIHTDGSGV------NKNG 349
           G+  +N  G   R  G+  SA D    +  +    A  V+ ++ TDGS +        +G
Sbjct: 185 GLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPADQVDMIVVTDGSRILGLGDLGVHG 244

Query: 348 LGVAIGHIDFFVNGRLVQP 292
           +G+AIG +D +V    + P
Sbjct: 245 IGIAIGKLDLYVAAAGINP 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,124,363
Number of Sequences: 37544
Number of extensions: 500986
Number of successful extensions: 1255
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1255
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)