Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1e15f
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 30 1.9
U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical pr... 30 1.9
U88171-2|AAB42252.1| 434|Caenorhabditis elegans Glutamate-gated... 29 3.4
U14525-1|AAA50786.1| 434|Caenorhabditis elegans avermectin-sens... 29 3.4
AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ... 29 3.4
Z81489-2|CAB04011.2| 360|Caenorhabditis elegans Hypothetical pr... 29 4.4
M98552-7|AAK82925.2| 355|Caenorhabditis elegans Hypothetical pr... 28 5.9
AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical ... 28 5.9
U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family... 28 7.8
AJ512486-1|CAD54736.1| 559|Caenorhabditis elegans core alpha-6-... 28 7.8
AF022968-8|AAN84870.1| 559|Caenorhabditis elegans Fucosyl trans... 28 7.8
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 29.9 bits (64), Expect = 1.9
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = -3
Query: 697 RLDKTAVDKXKSMCPIATPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFS----QSRAEGS 530
RL+K ++K + A P P + P P+ +S P ST S QS + S
Sbjct: 730 RLEKERLEKKAAAAAAANPNPTPIPPTPATPHSSAQQQPIPPPLSTQTSAEIQQSAQQPS 789
Query: 529 RPV-ILATLPSKFLPVTPAT*APRLKPT 449
PV ++A +P+ + T A P L PT
Sbjct: 790 VPVTMIANIPA--MSPTSAQPQPVLSPT 815
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 29.9 bits (64), Expect = 1.9
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 5/88 (5%)
Frame = -3
Query: 697 RLDKTAVDKXKSMCPIATPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFS----QSRAEGS 530
RL+K ++K + A P P + P P+ +S P ST S QS + S
Sbjct: 730 RLEKERLEKKAAAAAAANPNPTPIPPTPATPHSSAQQQPIPPPLSTQTSAEIQQSAQQPS 789
Query: 529 RPV-ILATLPSKFLPVTPAT*APRLKPT 449
PV ++A +P+ + T A P L PT
Sbjct: 790 VPVTMIANIPA--MSPTSAQPQPVLSPT 815
>U13646-1|AAC24418.2| 2585|Caenorhabditis elegans Hypothetical
protein ZK783.1 protein.
Length = 2585
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/55 (27%), Positives = 21/55 (38%)
Frame = +1
Query: 541 LVIGKTTYYDWEQTMLNTLKLFTPTDLVSTKTAWALLLDTLTFXCQRPSCPTGLH 705
+ G + DW K F + + + + DT T CQ S PT LH
Sbjct: 1 MTAGNNMFDDWNCGSHQIAKNFVNSSTPDLRPTFVVNFDTSTVICQHSSDPTDLH 55
>U88171-2|AAB42252.1| 434|Caenorhabditis elegans Glutamate-gated
chloride channelprotein 2 protein.
Length = 434
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 318 VIVVDWSSFSLSTYSTAVMAVTGVGSSIA-TFLK---NLKL-PLNKVHIVGFNLGAHVAG 482
+++V W SF + +STA GV + + T ++ N KL P++ V +V LGA
Sbjct: 259 IVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTF 318
Query: 483 VTGRNLE 503
V G LE
Sbjct: 319 VFGALLE 325
>U14525-1|AAA50786.1| 434|Caenorhabditis elegans
avermectin-sensitive glutamate-gated chloride channel
GluCl beta protein.
Length = 434
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +3
Query: 318 VIVVDWSSFSLSTYSTAVMAVTGVGSSIA-TFLK---NLKL-PLNKVHIVGFNLGAHVAG 482
+++V W SF + +STA GV + + T ++ N KL P++ V +V LGA
Sbjct: 259 IVIVSWVSFWIDLHSTAGRVALGVTTLLTMTTMQSAINAKLPPVSYVKVVDVWLGACQTF 318
Query: 483 VTGRNLE 503
V G LE
Sbjct: 319 VFGALLE 325
>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
protein W05F2.7 protein.
Length = 1424
Score = 29.1 bits (62), Expect = 3.4
Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 3/118 (2%)
Frame = +3
Query: 75 NGDAIQN-LERFGSLNKYYYYSNAQRNSITLTEDHFPTG--NDTAARFNNNWDIVVIIHG 245
NG I+N L+ G + S NS + +G N T N W+++ +G
Sbjct: 972 NGSFIENKLDSTGDFLSNAWNSLTSNNSTGGGNGTWISGALNSTGRFLTNTWNLLGNCNG 1031
Query: 246 HSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKN 419
+G + A ++GD+ + W+S S + S + G +S FL N
Sbjct: 1032 TAGNFVNNTQTWIGGAVDSTGDF--LSNTWNSLSSNNTSGNSTWIAGALNSTGGFLTN 1087
>Z81489-2|CAB04011.2| 360|Caenorhabditis elegans Hypothetical
protein C55A1.3 protein.
Length = 360
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +3
Query: 6 THFVKTRKMLKLITLLAF 59
+HF+KTR +LK+I+L+ F
Sbjct: 134 SHFIKTRHLLKVISLIGF 151
>M98552-7|AAK82925.2| 355|Caenorhabditis elegans Hypothetical
protein ZK370.7 protein.
Length = 355
Score = 28.3 bits (60), Expect = 5.9
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 3/155 (1%)
Frame = +3
Query: 6 THFVKTRKMLKLITLLAFAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFPT 185
T V ++LKL+ A + CN D+ Q E+ YY NA R ++ F
Sbjct: 76 TSVVLCAEILKLVITFAMFYKECNFDSRQFSEQVSK-----YYINAPRELAKMSVPSF-- 128
Query: 186 GNDTAARFNNNWDIVVIIHGHSGT-ATTTINPIVKDAF--LTSGDYNVIVVDWSSFSLST 356
A NN D V + + +G TT +V AF + W + +L
Sbjct: 129 ----AYALQNNLDFVGLSNLDAGLYQVTTQLKVVSTAFFMMLFLGRKFSTRRWMAITLLM 184
Query: 357 YSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFN 461
+ A + + V +S A N K + +IVG +
Sbjct: 185 FGVAFVQMNNVSASEA----NTKRETAENYIVGLS 215
>AL031629-6|CAA20980.2| 948|Caenorhabditis elegans Hypothetical
protein Y106G6D.7 protein.
Length = 948
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 372 MAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAG 482
+ +T S + TF LK+P VHI+G + G G
Sbjct: 10 LPMTAGASDVRTFFTGLKIPDGAVHIIGGDEGEVFVG 46
>U41038-3|AAK29708.3| 623|Caenorhabditis elegans Cadherin family
protein 9 protein.
Length = 623
Score = 27.9 bits (59), Expect = 7.8
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Frame = +3
Query: 339 SFSLSTYSTAVMAVTGVGSSIATFLKNLK--LPLNKVHIVGFNLGAHVAGVTGR-NLEGK 509
+F +TYST + T +GS++ T + N + PL + N + V+G L K
Sbjct: 333 AFQHNTYSTTISPTTPIGSTVITVVANSENNTPLTYSLLADTNT-VSIDEVSGNVVLRKK 391
Query: 510 VARITGLDPSARDWENNV 563
+ + L+ +A D EN V
Sbjct: 392 LEKPETLNVTASDGENVV 409
>AJ512486-1|CAD54736.1| 559|Caenorhabditis elegans core
alpha-6-fucosyltransferase protein.
Length = 559
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 102 RFGSLNKYYYYSNAQRNSITLTEDHFPTGN 191
+F SL+ YY+ Q + + + EDH N
Sbjct: 476 KFHSLDDIYYFGGQQAHEVIVIEDHIAQNN 505
>AF022968-8|AAN84870.1| 559|Caenorhabditis elegans Fucosyl
transferase protein 8 protein.
Length = 559
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +3
Query: 102 RFGSLNKYYYYSNAQRNSITLTEDHFPTGN 191
+F SL+ YY+ Q + + + EDH N
Sbjct: 476 KFHSLDDIYYFGGQQAHEVIVIEDHIAQNN 505
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,979,930
Number of Sequences: 27780
Number of extensions: 370607
Number of successful extensions: 969
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -