Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e12r
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    30   0.43 
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    28   1.7  
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.3  
SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyc...    25   9.2  

>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = -3

Query: 442 PAQHASSFHTPLSYTISSLT--PPLTNIVFH*VWWAPKNTPNPNLAH 308
           P  H    H PL  +   +   PP+  +  H   W P + P+PNL H
Sbjct: 134 PHSHHPPLHNPLPVSCQPVLRPPPVPQVPSH---WYPVSLPSPNLPH 177


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 433 VVP-APGDWEKGWRMMMMKYVHVPPGVKWFPKL 528
           V+P A G W  G R     +VHV    +WFPK+
Sbjct: 206 VLPYAVGKWWYGSRTYTRDHVHVDTVDEWFPKM 238


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -2

Query: 509 TPGGT*TYFIIIILQPFSQSPGAGTTCFFLPYSSIIYHFFAHSPSYKYRLS 357
           TP    TY +++ LQP S    +     +L Y  ++ ++   S +YK  ++
Sbjct: 327 TPPNDYTYALVVDLQPDSPPQLSSNLITWLKYKILLIYYHKSSSTYKNNIA 377


>SPBC25H2.02 |ths1||threonine-tRNA ligase Ths1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 452 SPGAGTTCFFLPYSSIIYHFFAHSPSYKY 366
           SPG+   CFFLP+ + IY+       Y+Y
Sbjct: 307 SPGS---CFFLPHGARIYNTLLKYMRYQY 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,183,659
Number of Sequences: 5004
Number of extensions: 64428
Number of successful extensions: 141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)