Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e12r
         (780 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0056 + 12955832-12956410,12957398-12957499                       31   0.78 
11_04_0340 - 16536571-16536705,16536820-16536951,16537265-165381...    31   0.78 
04_04_0261 + 24007790-24009098,24009191-24011118                       28   7.2  

>12_02_0056 + 12955832-12956410,12957398-12957499
          Length = 226

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 397 WYMIEEYGRKKHVVPAPGDW 456
           W ++ + GR++HVVPA G+W
Sbjct: 25  WIVVLQKGRRRHVVPAFGEW 44


>11_04_0340 - 16536571-16536705,16536820-16536951,16537265-16538106,
            16538480-16538940,16539032-16540314,16540423-16541627,
            16541857-16542157
          Length = 1452

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 12/30 (40%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
 Frame = -1

Query: 180  KQHYVYAINI--LDNKFLCIVFILLFRNII 97
            K HY+YA+N+  L +K L +V +++F  I+
Sbjct: 1405 KDHYIYAVNLGELISKLLALVIVMVFETIV 1434


>04_04_0261 + 24007790-24009098,24009191-24011118
          Length = 1078

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -1

Query: 486 FHHHHSPALLPVTW 445
           FHHHH P LLP +W
Sbjct: 47  FHHHHQPLLLP-SW 59


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,036,599
Number of Sequences: 37544
Number of extensions: 406550
Number of successful extensions: 851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)