Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e12r
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    26   0.45 
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    26   0.45 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   3.2  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   7.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.7  

>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 435 NMLLPSILLYHIPFLRSLPLLQISSFIE 352
           NM + S+ ++ I     +P+L ISSF+E
Sbjct: 93  NMFIVSLAIFDIIMAFEMPMLVISSFME 120


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 435 NMLLPSILLYHIPFLRSLPLLQISSFIE 352
           NM + S+ ++ I     +P+L ISSF+E
Sbjct: 93  NMFIVSLAIFDIIMAFEMPMLVISSFME 120


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 119 YYCLEI**LDNNTLDKYNRKSSC 51
           YY  EI  +DN T+ KY+ +  C
Sbjct: 390 YYGEEIGMVDNTTIYKYDVRDGC 412


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 506 VLSGFRSSWRSHREYRSSF*K*GLSLNC 589
           V SGFRSS R+++   SS  +    +NC
Sbjct: 40  VSSGFRSSLRNYKTLISSHDELPGHINC 67


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = -1

Query: 483 HHHHSPALLP 454
           HHHHS A  P
Sbjct: 431 HHHHSHAATP 440


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,763
Number of Sequences: 438
Number of extensions: 4436
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)