Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1e11f
(307 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0032 + 10775031-10775520,10775661-10776246,10776333-107769... 29 0.72
06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247 28 1.3
02_05_1320 - 35693575-35694846 27 2.2
12_02_0076 + 13284747-13285434,13285507-13285829 26 5.1
03_02_0583 + 9635002-9637299 26 5.1
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 26 6.7
07_01_0951 - 8001093-8001344,8001475-8001990,8002057-8002209,800... 25 8.9
06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338 25 8.9
03_01_0085 + 690618-691012,691114-691193,691775-691959,692363-69... 25 8.9
01_06_0291 - 28236235-28236576,28236785-28236900,28237560-282377... 25 8.9
>06_02_0032 +
10775031-10775520,10775661-10776246,10776333-10776973,
10777270-10777973
Length = 806
Score = 29.1 bits (62), Expect = 0.72
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 83 IVIMSIGLTCFGLALGYIAYMRQKYESMGYYSAI 184
++ ++I L GL L Y+A R + ES GY+ A+
Sbjct: 752 VMNITIVLNLLGLLLAYMAGSRMRLESSGYFIAL 785
>06_02_0028 + 10755164-10755668,10755740-10756283,10756372-10758247
Length = 974
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 80 NIVIMSIGLTCFGLALGYIAYMRQKYESMGYY 175
N++ ++I L GL L Y+A R + +S GY+
Sbjct: 908 NVMNITIVLDLLGLLLAYMAGSRMRLQSSGYF 939
>02_05_1320 - 35693575-35694846
Length = 423
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 29 RSTTAFRVVNFELYAKPNIVIMSIGLTCFGLALGYIAYMRQKYESMGYYSAIDKD 193
R+ AFR + EL KP++V ++ L F +A G +A R ++ M + ++ D
Sbjct: 164 RAIQAFRTLPAELGIKPSVVSHNVLLKSF-VASGDLASARALFDEMPSKADVEPD 217
>12_02_0076 + 13284747-13285434,13285507-13285829
Length = 336
Score = 26.2 bits (55), Expect = 5.1
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +2
Query: 170 YYSAIDKDGKEIFEKKKSKWD 232
Y + +KD K+IF++ K+ WD
Sbjct: 245 YLDSTEKDVKKIFDRFKNDWD 265
>03_02_0583 + 9635002-9637299
Length = 765
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 93 IMTILGFAYSSKLTTLNAVVDRIDR 19
IM +LG + + K T ++A+ DRI R
Sbjct: 144 IMAVLGASGAGKTTLIDALADRIQR 168
>01_06_1801 -
39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/36 (27%), Positives = 21/36 (58%)
Frame = -2
Query: 228 HFDFFFSKISFPSLSIAE*YPIDSYFCRMYAMYPRA 121
HFD +++ L E YP ++ FC++ ++P++
Sbjct: 204 HFDLDPNRVFDIVLECFELYPDNTIFCQLIPLFPKS 239
>07_01_0951 -
8001093-8001344,8001475-8001990,8002057-8002209,
8002272-8002568
Length = 405
Score = 25.4 bits (53), Expect = 8.9
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -2
Query: 150 CRMYAMYPRAKPKHVSPMLIMTIL----GFAYSSKLTTLNA 40
CR M+P H++PML + L G A + TT NA
Sbjct: 8 CRRVVMFPFPFRSHIAPMLQLAELLRGRGLAVTVVRTTFNA 48
>06_02_0026 + 10729415-10729434,10730049-10730423,10730511-10732338
Length = 740
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 83 IVIMSIGLTCFGLALGYIAYMRQKYESMGYY 175
++ +++ + GL L Y+A R + ES GY+
Sbjct: 670 VMHLTMVMNLLGLLLAYMAGSRMRSESSGYF 700
>03_01_0085 +
690618-691012,691114-691193,691775-691959,692363-693320,
693391-693518,693951-694010,694113-694163,694704-694821,
694990-695915,695916-697707,697810-697943,698029-698526
Length = 1774
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 200 EIFEKKKSKWD*NYRICKNCK 262
E F + +SKW+ + IC +C+
Sbjct: 147 EAFFQSRSKWNCGWHICSSCE 167
>01_06_0291 -
28236235-28236576,28236785-28236900,28237560-28237731,
28238916-28239044,28239165-28239320
Length = 304
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2
Query: 137 AYMRQKYESMGYYSAIDKDGKEIFEKKKSK 226
+YM Q++ +GYY D D +++ E+ +K
Sbjct: 216 SYMGQEFIRVGYYVNNDNDDEQLREEPPAK 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,228,012
Number of Sequences: 37544
Number of extensions: 128423
Number of successful extensions: 262
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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