Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e11f
         (307 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-3625|AAN12189.1|   99|Drosophila melanogaster CG32448-P...   109   5e-25
AY069510-1|AAL39655.1|  470|Drosophila melanogaster LD22971p pro...    27   6.0  
AE014297-2006|AAF55167.2|  470|Drosophila melanogaster CG6276-PA...    27   6.0  
AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin h...    26   7.9  
AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington d...    26   7.9  
AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington d...    26   7.9  
AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA...    26   7.9  

>AE014296-3625|AAN12189.1|   99|Drosophila melanogaster CG32448-PA
           protein.
          Length = 99

 Score =  109 bits (263), Expect = 5e-25
 Identities = 47/76 (61%), Positives = 59/76 (77%)
 Frame = +2

Query: 5   PGEGLRSMRSTTAFRVVNFELYAKPNIVIMSIGLTCFGLALGYIAYMRQKYESMGYYSAI 184
           PG+G+RSMRST  FR++NFELY KPN +IM +GLT      GYIAYMR KYES+GYY A+
Sbjct: 23  PGDGIRSMRSTGVFRLINFELYTKPNKIIMGLGLTAIAGVFGYIAYMRYKYESLGYYVAV 82

Query: 185 DKDGKEIFEKKKSKWD 232
            ++G+E F KKKS W+
Sbjct: 83  QENGQEKFIKKKSNWE 98


>AY069510-1|AAL39655.1|  470|Drosophila melanogaster LD22971p
           protein.
          Length = 470

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -2

Query: 168 PIDSYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVVDRIDRKPSPG 4
           P  SYF RM+ ++P  + KH  P  + T +  A  + L+ L++ + R      PG
Sbjct: 100 PCWSYFDRMFFLHPYLRKKHQQPKSLDTQVQDAL-AHLSNLSSRMQRERSVTIPG 153


>AE014297-2006|AAF55167.2|  470|Drosophila melanogaster CG6276-PA
           protein.
          Length = 470

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -2

Query: 168 PIDSYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVVDRIDRKPSPG 4
           P  SYF RM+ ++P  + KH  P  + T +  A  + L+ L++ + R      PG
Sbjct: 100 PCWSYFDRMFFLHPYLRKKHQQPKSLDTQVQDAL-AHLSNLSSRMQRERSVTIPG 153


>AF177386-1|AAD51369.1| 3584|Drosophila melanogaster huntingtin
            homolog protein.
          Length = 3584

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 3    NLARVCDLCDQLQHLEW 53
            NL + C++C+   H++W
Sbjct: 3096 NLVKFCEICESRDHIKW 3112


>AF147779-1|AAF03256.1| 3583|Drosophila melanogaster Huntington
            disease protein homolog protein.
          Length = 3583

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 3    NLARVCDLCDQLQHLEW 53
            NL + C++C+   H++W
Sbjct: 3095 NLVKFCEICESRDHIKW 3111


>AF146362-1|AAF03255.1| 3583|Drosophila melanogaster Huntington
            disease protein homolog protein.
          Length = 3583

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 3    NLARVCDLCDQLQHLEW 53
            NL + C++C+   H++W
Sbjct: 3095 NLVKFCEICESRDHIKW 3111


>AE014297-4258|AAF56808.1| 3583|Drosophila melanogaster CG9995-PA
            protein.
          Length = 3583

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +3

Query: 3    NLARVCDLCDQLQHLEW 53
            NL + C++C+   H++W
Sbjct: 3095 NLVKFCEICESRDHIKW 3111


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,487,078
Number of Sequences: 53049
Number of extensions: 230550
Number of successful extensions: 534
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 568694034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)