Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e11f
         (307 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical pr...    27   2.6  
U00056-1|AAN65308.2|  476|Caenorhabditis elegans Hypothetical pr...    27   2.6  
AY349016-1|AAQ55496.1|  394|Caenorhabditis elegans NHR-41 protein.     27   3.4  
AY349015-1|AAQ55495.1|  459|Caenorhabditis elegans NHR-41B protein.    27   3.4  
AY349014-1|AAQ55494.1|  583|Caenorhabditis elegans NHR-41A protein.    27   3.4  
AC024882-4|AAF60933.2|  338|Caenorhabditis elegans Seven tm rece...    26   4.5  
Z81075-6|CAB03049.1|  564|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z81070-13|CAB03009.1|  564|Caenorhabditis elegans Hypothetical p...    26   6.0  
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot...    26   6.0  
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot...    26   6.0  
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote...    26   6.0  
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote...    26   6.0  
AC024200-10|AAF35999.1|  284|Caenorhabditis elegans Hypothetical...    26   6.0  
U40030-2|AAR12978.2|  292|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>U46674-4|AAA85756.1|  574|Caenorhabditis elegans Hypothetical
           protein T26A8.4 protein.
          Length = 574

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = -2

Query: 123 AKPKHVSPMLIMTILGFAYSSKLTTLNAVVDRIDRKPSPG 4
           + P H +P++   I   ++ S+L     VV  I R P PG
Sbjct: 307 SSPPHATPVIHAPIPQASHPSQLPPPAVVVPTIQRNPGPG 346


>U00056-1|AAN65308.2|  476|Caenorhabditis elegans Hypothetical
           protein R05H11.1 protein.
          Length = 476

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = +2

Query: 134 IAYMRQKYESMGYYSAIDKDGKEI-----FEKKKSKWD*NYRICK 253
           + + + KY +  +YS  DKDGK       +  K SK+  NY  CK
Sbjct: 78  VYFEKYKYNACVFYSWRDKDGKRTIWNNSYYLKSSKFQ-NYMFCK 121


>AY349016-1|AAQ55496.1|  394|Caenorhabditis elegans NHR-41 protein.
          Length = 394

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 180 AE*YPID--SYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVV 34
           AE  P++  S  C          P+H+SP L+++++   + +KL  L A++
Sbjct: 3   AERRPVNNSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHETKLGGLEALI 53


>AY349015-1|AAQ55495.1|  459|Caenorhabditis elegans NHR-41B protein.
          Length = 459

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 180 AE*YPID--SYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVV 34
           AE  P++  S  C          P+H+SP L+++++   + +KL  L A++
Sbjct: 100 AERRPVNNSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHETKLGGLEALI 150


>AY349014-1|AAQ55494.1|  583|Caenorhabditis elegans NHR-41A protein.
          Length = 583

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 180 AE*YPID--SYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVV 34
           AE  P++  S  C          P+H+SP L+++++   + +KL  L A++
Sbjct: 224 AERRPVNNSSMLCNNDNNQQNTTPEHLSPNLLLSLVKLEHETKLGGLEALI 274


>AC024882-4|AAF60933.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 158 protein.
          Length = 338

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 59  FELYAKPNIVIMSIGLTCFGLALGYIA 139
           FELY K ++ ++  G +CFG+ +  IA
Sbjct: 84  FELYPKISLFLIVGGTSCFGVTIYAIA 110


>Z81075-6|CAB03049.1|  564|Caenorhabditis elegans Hypothetical
           protein F26E4.11 protein.
          Length = 564

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 165 IDSYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVVDRIDR 19
           I ++ C +  M   A+    SP L +T + F Y  KL T N + +++ R
Sbjct: 261 ITNFVCELIQMLSFAQLLAFSPGLNLTSIFFLYHMKL-TYNCMTEQLSR 308


>Z81070-13|CAB03009.1|  564|Caenorhabditis elegans Hypothetical
           protein F26E4.11 protein.
          Length = 564

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/49 (30%), Positives = 25/49 (51%)
 Frame = -2

Query: 165 IDSYFCRMYAMYPRAKPKHVSPMLIMTILGFAYSSKLTTLNAVVDRIDR 19
           I ++ C +  M   A+    SP L +T + F Y  KL T N + +++ R
Sbjct: 261 ITNFVCELIQMLSFAQLLAFSPGLNLTSIFFLYHMKL-TYNCMTEQLSR 308


>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
           protein.
          Length = 2693

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 153 NMNQWDIILLLIKMEKRFLKRRNQNGIEIIEF 248
           +M++  I+ L +K E   LK +N N ++II+F
Sbjct: 219 HMHKNQIVHLDLKPENILLKAKNSNELKIIDF 250


>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
           protein.
          Length = 2708

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 153 NMNQWDIILLLIKMEKRFLKRRNQNGIEIIEF 248
           +M++  I+ L +K E   LK +N N ++II+F
Sbjct: 219 HMHKNQIVHLDLKPENILLKAKNSNELKIIDF 250


>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
             protein.
          Length = 18519

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 153   NMNQWDIILLLIKMEKRFLKRRNQNGIEIIEF 248
             +M++  I+ L +K E   LK +N N ++II+F
Sbjct: 16045 HMHKNQIVHLDLKPENILLKAKNSNELKIIDF 16076


>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
             protein.
          Length = 18534

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 153   NMNQWDIILLLIKMEKRFLKRRNQNGIEIIEF 248
             +M++  I+ L +K E   LK +N N ++II+F
Sbjct: 16045 HMHKNQIVHLDLKPENILLKAKNSNELKIIDF 16076


>AC024200-10|AAF35999.1|  284|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.7 protein.
          Length = 284

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +3

Query: 162 QWDIILLLIKMEKRFLKRRNQN 227
           +W+ I +++K ++RFL+R  +N
Sbjct: 76  EWNEIAVVLKRDERFLRRHRRN 97


>U40030-2|AAR12978.2|  292|Caenorhabditis elegans Hypothetical
           protein T13C2.7 protein.
          Length = 292

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 179 QNNIPLIHIFVACMQCILEPNQSMS 105
           QNN   IH  V+C Q +L    SMS
Sbjct: 235 QNNTIPIHKSVSCQQLVLSRKSSMS 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,791,208
Number of Sequences: 27780
Number of extensions: 131380
Number of successful extensions: 303
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 303
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)