Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e09f
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    27   1.6  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   4.8  
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ...    25   6.4  

>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 377 LKSDYVVTPSLDTSSNQIAVQNPETKPEWVHKLIRDG 487
           LKS+ V+   LD++ NQI V +P  K  W   L+ +G
Sbjct: 521 LKSEIVMPVLLDSTGNQIDVSHPSEK-GWRKLLLDNG 556


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = -2

Query: 410 QEMALLRNHFLIQMTLCIFIVNLIQSFTYF*IH*FTPSYNIYKIIASFRFPQVFCEMGMF 231
           Q++  LRN   ++M   I IVN I +FT+        +      I  +   +V     +F
Sbjct: 458 QKLLQLRNTRELRMLKKIGIVNTIGNFTWLFAPILVSAATFGTFIVLYGKTRVLSVDIVF 517

Query: 230 ACTSLF 213
           AC SLF
Sbjct: 518 ACLSLF 523


>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 528

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/50 (26%), Positives = 19/50 (38%)
 Frame = -3

Query: 325 IFKYTNSHLHTIFTK**PHSDFRRFFVKWECLLVPRYSKANETKRAKRHC 176
           +  +TNS    +F+K   HS  R F +   C      +     KR    C
Sbjct: 13  LHSFTNSSAQQLFSKSIAHSSRRNFVISSSCTKFRNVAIQRNAKREFSRC 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,489,857
Number of Sequences: 5004
Number of extensions: 50923
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)