Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e06r
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40945-2|AAA81720.1|  445|Caenorhabditis elegans Hypothetical pr...   107   8e-24
Z83125-10|CAB05625.1|  459|Caenorhabditis elegans Hypothetical p...    31   0.64 
Z70271-7|CAJ80829.1|  559|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z70271-6|CAA94232.1|  562|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in ge...    29   3.4  
AC017117-4|AAF16610.1|  247|Caenorhabditis elegans Hypothetical ...    29   4.5  

>U40945-2|AAA81720.1|  445|Caenorhabditis elegans Hypothetical
           protein F10D7.2 protein.
          Length = 445

 Score =  107 bits (257), Expect = 8e-24
 Identities = 61/186 (32%), Positives = 97/186 (52%)
 Frame = -3

Query: 729 KKVLSKLGLIYFLYLFVYSGLEFTITFLTHHNFKYTAMQQGKMFLVIGLIMAVLQGGAAR 550
           K+ + K+G IYFL+LF+YSGLEFT+ FLTH  F +  MQQGK++L  GL+M  +Q    R
Sbjct: 260 KQEMQKVGWIYFLFLFLYSGLEFTLPFLTHIRFDFDNMQQGKVYLFTGLLMLPIQAKYVR 319

Query: 549 RLGTKSAEVAARVSVALTPFAFLCIALAALSNPPFLAPLIWLWTGLVLYALSTAFAVSCM 370
           +   +  +  A   +A    A+L +A+A         PL+ L+ GL  YA+++A  V+ +
Sbjct: 320 KTPIEKQKAVAEFGIACIIPAYLLVAVAK-------TPLV-LYAGLFFYAIASATVVTSL 371

Query: 369 TSIXXXXXXXXXXXAVXXXXXXXXXXXXXXXXXXTSSVYWYSGAAITYAIGSLILIIPTV 190
           TS+            +                  +S+ +W  GA   Y +G+ +L IP +
Sbjct: 372 TSLVHVIYPQSEKGVLAGIFRSLGCLARALGPVISSTFFWLLGATTCYIMGAFLLFIPLI 431

Query: 189 MLFRLK 172
           +L RL+
Sbjct: 432 LLKRLE 437


>Z83125-10|CAB05625.1|  459|Caenorhabditis elegans Hypothetical
           protein T15D6.12 protein.
          Length = 459

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 150 YFTRNKERIES*FYITIYNAMYLNYSFCLYILQLFVFTSLFEKNYYV 10
           YF  ++E+I+S F I  YN  Y++Y +    L++F       K  ++
Sbjct: 35  YFFESEEQIDSSFPIKFYNVAYVDYRYDSPRLRIFTLNHCISKKNFL 81


>Z70271-7|CAJ80829.1|  559|Caenorhabditis elegans Hypothetical
           protein W08D2.3b protein.
          Length = 559

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
 Frame = -3

Query: 729 KKVLSKLGLIYFLYLFVYSGLEFTITFLT---HHNFKYTAMQQGKM----FLVIGLIM-- 577
           K+  SK   ++ ++L++YS + FT+TF++    H+  Y+ +    +    F   G I   
Sbjct: 23  KETASKHPSLFIIHLWIYSLIGFTVTFISLSYSHSACYSMISSAHLFNLHFAFNGSIFLG 82

Query: 576 AVLQGGAARRLGTKSAEVAARVSVA 502
           AV     +RRL  K   +   + ++
Sbjct: 83  AVFHSNLSRRLSLKYVYITCLILIS 107


>Z70271-6|CAA94232.1|  562|Caenorhabditis elegans Hypothetical
           protein W08D2.3a protein.
          Length = 562

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
 Frame = -3

Query: 729 KKVLSKLGLIYFLYLFVYSGLEFTITFLT---HHNFKYTAMQQGKM----FLVIGLIM-- 577
           K+  SK   ++ ++L++YS + FT+TF++    H+  Y+ +    +    F   G I   
Sbjct: 26  KETASKHPSLFIIHLWIYSLIGFTVTFISLSYSHSACYSMISSAHLFNLHFAFNGSIFLG 85

Query: 576 AVLQGGAARRLGTKSAEVAARVSVA 502
           AV     +RRL  K   +   + ++
Sbjct: 86  AVFHSNLSRRLSLKYVYITCLILIS 110


>U80954-2|AAK77629.1|  977|Caenorhabditis elegans Defective in germ
            line developmentprotein 3, isoform a protein.
          Length = 977

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 156  NIYFTRNKERIES*FYITIYNAMYLNYSFCLYILQLFVFTS 34
            NIY  RN++   S FY     ++Y+N   C Y ++L  F S
Sbjct: 919  NIYILRNRDFSNSFFYFLHQFSLYMN-PICAYRIRLHQFLS 958


>AC017117-4|AAF16610.1|  247|Caenorhabditis elegans Hypothetical
           protein F43C11.6 protein.
          Length = 247

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 594 VIGLIMAVLQGGAARRLGTKSAEVAARVSVALTPFAFLCIAL 469
           +I L  +V      + +G   AE+    S+ + PF+FLCI L
Sbjct: 137 IIILCASVFGESCGKLIGRFIAELPLATSLVMVPFSFLCIFL 178


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,351,476
Number of Sequences: 27780
Number of extensions: 300293
Number of successful extensions: 795
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)