Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e06f
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    28   1.2  
SPAC977.16c |dak2||dihydroxyacetone kinase Dak2 |Schizosaccharom...    27   3.6  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    26   6.3  

>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -2

Query: 91  CVRNVIVNSSPEYTNKYRK*INPNFD 14
           C+ + IVNS P+Y N++ K IN  F+
Sbjct: 384 CLEDWIVNSFPQYRNRFAK-INERFE 408


>SPAC977.16c |dak2||dihydroxyacetone kinase Dak2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -3

Query: 393 HPVLGWLLLTSCKTPRTP*IKRTRLSRSIAISTGPKMADSI 271
           H    W +L   K P  P ++ TR  +   +   PKM   I
Sbjct: 349 HNAKDWEVLADGKVPTAPALEHTRNEKHSGVKADPKMFTKI 389


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +2

Query: 458 TSYIFSLLVFWSSHHICYWFFN 523
           TSY FS+LVF +S ++ Y + N
Sbjct: 222 TSYAFSILVFPASDYLNYTYAN 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,677
Number of Sequences: 5004
Number of extensions: 51928
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)