Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e06f
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    31   1.2  
05_03_0423 + 13792424-13792564,13792712-13792944,13793681-137937...    31   1.2  
06_01_0480 - 3424682-3425029                                           30   2.2  
04_01_0063 - 630345-633743                                             29   2.9  
12_02_1175 + 26702744-26704507                                         29   3.8  
03_06_0047 + 31266940-31268394                                         29   5.0  
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438...    28   8.7  
01_01_1162 - 9253034-9254229,9254387-9254456,9254473-9254567,925...    28   8.7  

>10_08_0608 +
           19184722-19185224,19185331-19185410,19186048-19186235,
           19187021-19187927,19188015-19188142,19189270-19189356,
           19189422-19189472,19189582-19189668,19189746-19189873,
           19190469-19190608,19190721-19190882,19190964-19192733,
           19192807-19192922,19193077-19193227,19193243-19193371,
           19193598-19194139
          Length = 1722

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 407 RPRHSALAGSASQGCRPTSYIFSL---LVFWSSHHICYWFFNSYHSNCDVI*TENLSFY 574
           + R S L   AS+  R   Y F+L   L  +  H + Y  FNSYH +C++I    + F+
Sbjct: 654 KQRLSHLRDRASETGRRKQYPFNLIKDLHAYGHHRLIYEAFNSYH-HCEIIICMRIHFF 711


>05_03_0423 +
           13792424-13792564,13792712-13792944,13793681-13793756,
           13794003-13794089,13794500-13794553,13794654-13794695,
           13794818-13794896,13795059-13795129,13795235-13795297
          Length = 281

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +3

Query: 15  SKLGLIYFLYLFVYSGLEFTITFLTHHNFKYTAMQQGKMFLVIGLIMAVLQ 167
           S+  L+ F Y    +GL+  I +     F+Y+  Q   + LVIG+  ++ Q
Sbjct: 129 SRESLVIFFYSLGETGLQTAILYFLKVQFQYSKNQYANLLLVIGIAGSLSQ 179


>06_01_0480 - 3424682-3425029
          Length = 115

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
 Frame = +3

Query: 90  HHNFKYTAMQQGKMFLVIGLIMAV--LQGGAARRLGTKSAEVAARVSVALTPFAFLCIAL 263
           HH  +   +   ++F+++ +++ V  L  GAA   G +   + A   + L   AF  ++L
Sbjct: 29  HHRRRLLLLDSSRVFMLLAVVILVHLLTAGAAAVQGAEPCVLVAAFLLWLLGAAFAVLSL 88

Query: 264 AALSNPPFLAPLIWLWTGLVLYAL 335
           AA   P   A    + T L  Y +
Sbjct: 89  AAGQFPVLAATAATIATTLRSYLI 112


>04_01_0063 - 630345-633743
          Length = 1132

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 386 TGCGPRRRPRHSALAGSASQGCRPTSYIFSLL 481
           TG GPR  P  S   G   Q CR +   +S++
Sbjct: 136 TGLGPRLDPARSEATGDCEQSCRNSKCCYSVI 167


>12_02_1175 + 26702744-26704507
          Length = 587

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +3

Query: 60  GLEFTITFLTHHNFKYTAMQQGKMFLVIGLIMAVLQGGAARRLGTKSAEVAARVSVALTP 239
           GL  T+     H   Y       +++ +G + A L    A  L  +   + A + V L  
Sbjct: 509 GLSLTVAAGARHPEAYAVEGGAAVYVAVGFLAAALVWAVAV-LPARGMRLDAVLGVGLLV 567

Query: 240 --FAFLCIALAALSNPP 284
             F FLC++LA L+  P
Sbjct: 568 IYFVFLCVSLAILTPLP 584


>03_06_0047 + 31266940-31268394
          Length = 484

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/15 (66%), Positives = 15/15 (100%)
 Frame = +2

Query: 440 SQGCRPTSYIFSLLV 484
           S+GC+PT+YI+S+LV
Sbjct: 267 SRGCQPTTYIYSVLV 281


>03_02_0838 +
           11641484-11642030,11643614-11643650,11643784-11643841,
           11646176-11646265,11646796-11646913,11648093-11648277,
           11648330-11648455,11648578-11648634,11648741-11648821,
           11649068-11649102,11649265-11649354,11649443-11649599,
           11649785-11649901
          Length = 565

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 219 VSVALTPFAFLCIALAALSNPPF--LAPLIWLWTGLVLYALSTAFAVSCMTSI 371
           V+ A +P +  C  L  L  P F  L+   W+W+ L  ++L    A +C TS+
Sbjct: 86  VAKARSPSSLDCPKLGILIEPFFIPLSSSSWMWSSLGSWSLLPWMARTCSTSM 138


>01_01_1162 -
           9253034-9254229,9254387-9254456,9254473-9254567,
           9255344-9255487,9255514-9255622
          Length = 537

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +3

Query: 168 GGAARRLGTKSAEVAARVSVALTPFAFLCIALAALSNPPFLAP 296
           G  ARR G  S   A+ +  A   F  L  A+AA +  PF AP
Sbjct: 159 GANARRCGFLSKIKASPLPTARRAFPLLATAVAAAAAAPFPAP 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,218,102
Number of Sequences: 37544
Number of extensions: 326232
Number of successful extensions: 926
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)