Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1e02r
(871 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 55 2e-08
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 33 0.053
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 29 1.1
SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein L9|Schizosacchar... 28 1.5
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 3.5
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 27 4.6
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po... 27 4.6
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 26 6.1
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 54.8 bits (126), Expect = 2e-08
Identities = 34/131 (25%), Positives = 62/131 (47%), Gaps = 3/131 (2%)
Frame = -3
Query: 842 IRAAYEDVRSDTTPTEWAVFKFE---GARIVCSARGSDFTEFRTQFSDDERAFGYLRLQM 672
IR YE V S WA+F +E G + A G+D EF +F ++ FG+LR++
Sbjct: 14 IRNVYEKVLSGADDCSWAIFGYEKGQGNILKVVASGNDNDEFLDEFDENAVLFGFLRVK- 72
Query: 671 GDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAIIKDIISNFAVELQLENQSEIDIDQFK 492
D + KF+ + W G + + S A + +++ + V++ S++++D
Sbjct: 73 -DVNTGLNKFVLVCWCGE--AAARKGLFSIHMATVSNLLKGYHVQITGRESSDLNMDDII 129
Query: 491 DALNRAGGANY 459
+ A G+ Y
Sbjct: 130 RRVADASGSKY 140
>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 230
Score = 33.1 bits (72), Expect = 0.053
Identities = 26/93 (27%), Positives = 46/93 (49%)
Frame = +1
Query: 550 FDMMSLMIALSVDILARLITDTFGPTHVMNINFLRLDISSPICNLRYPNARSSSENCVRN 729
F ++S+ A+S ++ TF P+ ++IN+ L P R + SSS + +
Sbjct: 6 FLLISIFTAISYLVVDGATPRTFAPSASVSINYGTLSTVFPSLYRRASTSSSSSSSSIST 65
Query: 730 SVKSLPLAEHTIRAPSNLNTAHSVGVVSDLTSS 828
S S P + +PS+ +T+ S G S +T+S
Sbjct: 66 SHDSQPSTSSS--SPSSTSTSSSSG-TSVITAS 95
>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -3
Query: 239 FLLSCVKLITFLITYRNSLF-IFQKYTCYIIFFSVVLIRIYQIKSR*SVVHFSKRGERIY 63
F S K ++++ N F I+ + +I+FF+V L Y S + S R RI+
Sbjct: 190 FYTSKRKCFRSILSWHNETFNIWTHLSAFIVFFAV-LAYFYPSSSSWVSSNVSNRIVRIF 248
Query: 62 FLLKIFKNL 36
FLL K L
Sbjct: 249 FLLSAMKCL 257
>SPCC613.06 |rpl902|rpl9-2|60S ribosomal protein
L9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 189
Score = 28.3 bits (60), Expect = 1.5
Identities = 16/39 (41%), Positives = 24/39 (61%)
Frame = +1
Query: 547 KFDMMSLMIALSVDILARLITDTFGPTHVMNINFLRLDI 663
K + +++ +SVDI ARL+T GP V+ N R+DI
Sbjct: 7 KDETLTIPEGVSVDIKARLVT-VKGPRGVLKQNLRRVDI 44
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 797 EWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAF 693
EW VF R + +DF +FR+Q DDE F
Sbjct: 888 EWNVFAQYKRR---ESNATDFEDFRSQVGDDESKF 919
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 26.6 bits (56), Expect = 4.6
Identities = 23/93 (24%), Positives = 40/93 (43%)
Frame = -3
Query: 857 LDRETIRAAYEDVRSDTTPTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFGYLRL 678
L +ET E +T T + + +G R S +DF T SD E + L L
Sbjct: 685 LSKETFNFGGEANCENTDTTLFTTWGDQGFRPSDSICYNDFNLLETANSDAEASIHELEL 744
Query: 677 QMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTD 579
Q + +++R+ + T + P+ ++ R D
Sbjct: 745 QPLNAVNEREVDISQTDMTPSTALDTRVDTRVD 777
>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 594
Score = 26.6 bits (56), Expect = 4.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 606 HRHVRSYPRHEHKFLAFRHLVSHLQPEVSEC 698
H +RS+ + KFL HL+ HL S C
Sbjct: 23 HFWLRSFMSNNRKFLVHIHLIPHLNSLYSIC 53
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 26.2 bits (55), Expect = 6.1
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = -3
Query: 752 ARGSDFTEFRTQFSDDERAFGYLRLQMGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKA 573
+R F FR +D +R +LRL SKR K + W NVS+++ ++ K
Sbjct: 212 SRFQTFETFRKPLAD-KRRIEFLRL------SKRMKKLEELWTSENVSMLDALLLNKAKR 264
Query: 572 IIKDII 555
+ + I+
Sbjct: 265 LEQSIV 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,587,641
Number of Sequences: 5004
Number of extensions: 78132
Number of successful extensions: 218
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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