Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e02r
         (871 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020...    32   0.52 
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393     32   0.52 
08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034     32   0.69 
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666     31   0.91 
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200...    31   1.6  
11_03_0025 + 9047646-9047958,9048150-9048474,9049833-9051828,905...    31   1.6  
08_01_0470 - 4140669-4140728,4142004-4142270,4142526-4144557,414...    31   1.6  
09_04_0422 + 17422080-17422217,17422886-17423067,17423145-174233...    30   2.1  
02_05_0177 + 26505956-26506202,26506838-26507247,26507448-265076...    30   2.1  
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287...    30   2.8  
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811...    29   4.8  
08_01_0469 - 4127950-4127988,4127989-4128264,4128845-4130861,413...    29   4.8  
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408...    29   4.8  
08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073           29   6.4  
06_03_1259 - 28800954-28802468                                         29   6.4  
05_01_0103 + 686770-687017,687120-687270                               29   6.4  
11_06_0227 + 21475954-21476771,21477215-21479144,21479292-214794...    28   8.5  
05_07_0240 + 28606345-28607316                                         28   8.5  
03_06_0174 - 32141956-32141985,32143658-32144452,32147645-321477...    28   8.5  
03_05_0502 + 24947444-24947665,24947768-24947823,24947929-249480...    28   8.5  

>11_06_0228 +
           21497248-21498143,21499831-21501700,21501934-21502038,
           21502139-21502232,21502335-21502363
          Length = 997

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 35/164 (21%), Positives = 76/164 (46%), Gaps = 3/164 (1%)
 Frame = -3

Query: 803 PTEWAVFKFEGARIVCSARGSDFTEFRTQFSDDERAFG--YLRLQMGDEMSKRKKFMFMT 630
           P++W + K       C +R    T  R   ++  + FG  Y+   + D+ SK   +  + 
Sbjct: 310 PSKWNIIKLALIDSSCGSRVITTTRIRQVANEVAKEFGDVYMMEPLSDDNSKTLFYNRIF 369

Query: 629 WVGPNVSVINRAKMSTDKAIIKDIISNFAVELQLENQSEIDIDQ-FKDALNRAGGANYGT 453
            V  N    N++  +T+K I+K       + L +   + + +D+  ++        ++GT
Sbjct: 370 GVACNGPTDNQSVEATEK-ILKRC---GGIPLSIITIASLLVDKPAREWSVIYDSISFGT 425

Query: 452 GVRDL*IENVCPALATWNFKRILSLSFYYINNECKDTILYIKIF 321
           G ++  ++N+         ++ILS S+Y++ +  K  +LY+ I+
Sbjct: 426 GDQNEAVQNM---------RKILSFSYYHLPSYLKTCMLYLSIY 460


>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
          Length = 158

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
 Frame = -3

Query: 746 GSDFTEFRTQFSDDERAFGYLRLQ-MGDEMSKRKKFMFMTWVGPNVSVINRAKMSTDKAI 570
           G  + +F      DE  +       + DE  ++ K  F++W      V ++   ++ K  
Sbjct: 69  GESYDDFTACLPADECRYAVFDFDFVTDENCQKSKIFFISWAPDTSRVRSKMLYASSKDR 128

Query: 569 IKDIISNFAVELQLENQSEIDIDQFK 492
            K  +    VELQ  + SE+ +D  K
Sbjct: 129 FKRELDGIQVELQATDPSEMSMDIVK 154


>08_02_0539 + 18338781-18339592,18347885-18349860,18350030-18350034
          Length = 930

 Score = 31.9 bits (69), Expect = 0.69
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 401 NFKRILSLSFYYINNECKDTILYIKIF 321
           N  RILSLSF+ + N  K  +LY+ IF
Sbjct: 402 NMNRILSLSFHDLPNHLKTCLLYLSIF 428


>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
          Length = 145

 Score = 31.5 bits (68), Expect = 0.91
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
 Frame = -3

Query: 668 DEMSKRKKFMFMTWVGPNVSVINRAKM--STDKAIIKDIISNFAVELQLENQSEIDIDQF 495
           +E  ++ K  F+ W  P+VS I RAKM  +T K   +  +     E+Q  + SE+DI+  
Sbjct: 83  EENCQKSKIFFVAW-SPSVSRI-RAKMLYATSKERFRRELDGVHYEIQATDPSELDIELL 140

Query: 494 KD 489
           ++
Sbjct: 141 RE 142


>11_04_0236 +
           15215386-15216197,15216854-15218888,15219131-15220017,
           15222420-15226194
          Length = 2502

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 401 NFKRILSLSFYYINNECKDTILYIKIF 321
           N +RILS  +Y++ +  K  +LYI IF
Sbjct: 400 NIRRILSFCYYHLPSHLKTCLLYISIF 426


>11_03_0025 +
           9047646-9047958,9048150-9048474,9049833-9051828,
           9051991-9052190,9052851-9052899
          Length = 960

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 398 FKRILSLSFYYINNECKDTILYIKIF 321
           F+RIL LSFY + ++ K   LY+ IF
Sbjct: 349 FRRILMLSFYDLPHDLKTCFLYLSIF 374


>08_01_0470 -
           4140669-4140728,4142004-4142270,4142526-4144557,
           4144763-4145550
          Length = 1048

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -3

Query: 401 NFKRILSLSFYYINNECKDTILYIKIF 321
           N +RILS S+Y + +  K  ILYI IF
Sbjct: 392 NTRRILSFSYYDLPSHLKPCILYISIF 418


>09_04_0422 +
           17422080-17422217,17422886-17423067,17423145-17423331,
           17423602-17423769,17423915-17424217,17424312-17424497
          Length = 387

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +3

Query: 495 ELVDVYLRLIFKLQLHSKVRYDVLDDSFVGGHLGSVD 605
           ++VD+++  +FK+ LHS+  Y  + D  + G L SVD
Sbjct: 303 DMVDIHIAAVFKV-LHSEQNYLRIQDDTLEGTLASVD 338


>02_05_0177 +
           26505956-26506202,26506838-26507247,26507448-26507624,
           26507775-26507999,26508089-26508265,26508357-26508593,
           26508855-26508944,26509102-26509254
          Length = 571

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 474 CPIECILELVDVYLRLIFKLQLHSKV--RYDVLDDSFVGGHLGSVDHRHVRSYPRHEHKF 647
           CP   I+ +V V+  ++   QLH +   R+ +L    VG + G   +  V S   H H  
Sbjct: 501 CPGVPIVPMVSVFFNMLLFAQLHEEAWYRFVILSLLAVGVYAGYGQYHAVPSSSDHPHPA 560

Query: 648 LAFRHLVS 671
           +A+  + S
Sbjct: 561 VAYHGIPS 568


>08_01_0321 +
           2872609-2873027,2873477-2873905,2874743-2874944,
           2875909-2875947,2876309-2876354,2877380-2877922,
           2878827-2880847,2880972-2881215,2881642-2881684,
           2881923-2881962,2883580-2883675,2883712-2883759,
           2883964-2884290
          Length = 1498

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 401 NFKRILSLSFYYINNECKDTILYIKIF 321
           N KRILS S+Y + +  K+ +LY+ +F
Sbjct: 681 NTKRILSFSYYDLPSHLKNCLLYLSMF 707


>10_01_0007 -
           79867-79950,80258-80303,80409-80641,80765-80836,
           81135-81230,81506-81607,81684-82349
          Length = 432

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +1

Query: 745 PLAEHTIRAPSNLNTAHSVGVVSD 816
           P+ +H   APS +  AH +G++SD
Sbjct: 229 PVTDHNFDAPSKIPFAHGMGLISD 252


>08_01_0469 -
           4127950-4127988,4127989-4128264,4128845-4130861,
           4131134-4131987
          Length = 1061

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 401 NFKRILSLSFYYINNECKDTILYIKIF 321
           N +RILSLS+Y +    K  +LY+ IF
Sbjct: 414 NTRRILSLSYYDLPLHLKPCLLYLSIF 440


>08_01_0463 -
           4075037-4075316,4075997-4076151,4076818-4078861,
           4080757-4081589
          Length = 1103

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 401 NFKRILSLSFYYINNECKDTILYIKIF 321
           N +RILSLS+Y +    K  +LY+ IF
Sbjct: 423 NTRRILSLSYYDLPLHLKPCLLYLSIF 449


>08_01_0466 + 4105524-4105812,4105975-4106356,4107042-4109073
          Length = 900

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 401 NFKRILSLSFYYINNECKDTILYIKIF 321
           N +RILS S+Y + +  K  +LY+ IF
Sbjct: 353 NTRRILSFSYYDLPSHLKACLLYLSIF 379


>06_03_1259 - 28800954-28802468
          Length = 504

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +3

Query: 594 GSVDHRHVRSYPRHEHKFLAFRHLVSHLQPEVSECAFIIRELRAELREVATPGRAHY 764
           G    R    +PR +H+ L   H + H+  E ++     RE R      A PG  H+
Sbjct: 151 GGEPRRLELQFPR-QHRELIHGHYIQHVIDEATKMRLRSRERRLYTNRAAAPGDDHH 206


>05_01_0103 + 686770-687017,687120-687270
          Length = 132

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
 Frame = -3

Query: 668 DEMSKRKKFMFMTWVGPNVSVINRAKM--STDKAIIKDIISNFAVELQLENQSEIDIDQF 495
           +E  ++ K  F+ W  P+ S + R+KM  ++ K   K  +    VELQ  + +E+ +D  
Sbjct: 70  EENCQKSKIFFIAW-SPDTSRV-RSKMIYASSKDRFKRELDGIQVELQATDPTEVGLDVI 127

Query: 494 KDALN 480
           +   N
Sbjct: 128 RGRAN 132


>11_06_0227 +
           21475954-21476771,21477215-21479144,21479292-21479426,
           21480287-21480392,21480560-21480576
          Length = 1001

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 410 ATWNFKRILSLSFYYINNECKDTILYIKIF 321
           A  N ++ILS S+Y++ +  K  +LY+ I+
Sbjct: 405 AVQNTRKILSFSYYHLPSYLKTCMLYLSIY 434


>05_07_0240 + 28606345-28607316
          Length = 323

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 693 ECAFIIRELRAELREVATPGRAHYPGAFKLEHRP 794
           E A  I+ LRA    +AT   AH P AF+  HRP
Sbjct: 73  EVAAAIQHLRAADPALATVIDAHDPPAFQCPHRP 106


>03_06_0174 -
           32141956-32141985,32143658-32144452,32147645-32147759,
           32148134-32148399,32150193-32150213
          Length = 408

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -3

Query: 665 EMSKRKKFMFMTWVGPNVSVINRAKM--STDKAIIKDIISNFAVELQLENQSE 513
           E  ++ K  F+ W  P+ S I RAKM  ST K  IK  +  F  E+Q  + +E
Sbjct: 84  ENVQKSKIFFIAW-SPSTSRI-RAKMLYSTSKDRIKQELDGFHYEIQATDPTE 134


>03_05_0502 +
           24947444-24947665,24947768-24947823,24947929-24948099,
           24948508-24948631,24949086-24949142,24949216-24949312,
           24949619-24949826,24950637-24950697,24950793-24950846
          Length = 349

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +1

Query: 598 RLITDTFGPTHVMNINFLRLDISSPI-CNLRYPNARSSSENCVRNSVKSLPLAEH 759
           RL++      HV+N N   LD+++P+  NL  PN  +   + V+     L L +H
Sbjct: 237 RLVSFKGKTIHVLNKNEHALDMAAPVHDNLGDPNGYTDDYSLVKKRTNVLLLGDH 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,677,125
Number of Sequences: 37544
Number of extensions: 486544
Number of successful extensions: 1036
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)