Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e02r
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    25   0.91 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.5  

>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
 Frame = -3

Query: 833 AYEDVRSDTTPTEWAVFKFEGARIVCSARGSDFTE-----FRTQFSDDERAFGYLRLQM 672
           A ED  S     E A    +  R VCS +     E     FR +F  DER   Y++  M
Sbjct: 18  AIEDTMSKKMTIEEAKKTIKNLRKVCSKKNDTPKELLDGQFRGEFPQDERLMCYMKCIM 76


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 7/19 (36%), Positives = 9/19 (47%)
 Frame = +3

Query: 606 HRHVRSYPRHEHKFLAFRH 662
           H H+ + P H H   A  H
Sbjct: 423 HSHIHATPHHHHSHAATPH 441


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/48 (22%), Positives = 24/48 (50%)
 Frame = +3

Query: 441 ISNASAVVRSPCPIECILELVDVYLRLIFKLQLHSKVRYDVLDDSFVG 584
           ++  S  VRS  P    ++ +D+YL + F     + + Y  ++ ++ G
Sbjct: 284 MTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYTYWG 331


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 579 VGGHLGSVDHRHVRSYPRHE 638
           +GG    V+   VR YPR++
Sbjct: 446 IGGDSDLVERYEVRCYPRYD 465


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 9/39 (23%), Positives = 19/39 (48%)
 Frame = -3

Query: 788 VFKFEGARIVCSARGSDFTEFRTQFSDDERAFGYLRLQM 672
           V K+ G  ++C    +      T+ + D+R+    R++M
Sbjct: 282 VCKWPGCEVICEDYQAFLKHLNTEHTLDDRSTAQARVRM 320


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 244,384
Number of Sequences: 438
Number of extensions: 6049
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)