Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e01r
         (497 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    25   6.3  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   6.3  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   8.4  

>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 46  FII*LFYSLIHKYY*QINIIL 108
           F+I LFYSL H +  +IN I+
Sbjct: 148 FVISLFYSLFHAHPFRINTII 168


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 381 LIF*FHILNTNLRFNSLFHTYR*IGC 304
           L+   H+   N + NS+F TY   GC
Sbjct: 486 LVLCTHVAKVNEKTNSIFRTYEVHGC 511


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 276  GNKINPDNFSSLSICMYETVN 338
            GN +NP+  +S S C Y+T +
Sbjct: 1454 GNLLNPNATTSCSYCPYQTAD 1474


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,958,217
Number of Sequences: 5004
Number of extensions: 37603
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)