Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e01r
         (497 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical pr...    30   0.81 
Z81049-1|CAB61001.2|  503|Caenorhabditis elegans Hypothetical pr...    28   4.3  
L29052-1|AAA27982.2|  503|Caenorhabditis elegans cell death prot...    28   4.3  
AF210702-1|AAG42045.1|  503|Caenorhabditis elegans caspase CED-3...    28   4.3  
AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine re...    27   5.7  

>Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical
           protein F54F12.1 protein.
          Length = 1217

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = +2

Query: 53  FNYFTPLFTNIINKLILFCTLYKSNANKPPYSFI*IKSSQKYKNTVEIINVNMIYE*GN- 229
           F Y +PL T I N+L++   + +  +    YS   +    +YK  ++I++   +   G  
Sbjct: 20  FQYTSPLVTAIQNRLVVLEKVRQGCSIMRNYST--LPGKDEYKTELDILSKLRLSIDGEL 77

Query: 230 -LSYFRSITF*NPIAKWQ*NKP 292
            LS  R I   N I+ WQ  KP
Sbjct: 78  ILSTGRVIPLLNKISNWQDGKP 99


>Z81049-1|CAB61001.2|  503|Caenorhabditis elegans Hypothetical
           protein C48D1.2 protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 222 KGIYLILGLLRFK-IP*QNGNKINPDNFSSLSICMYETV 335
           +G+ LI+    F+ +P +NG K + DN ++L  CM  TV
Sbjct: 242 RGMCLIINNEHFEQMPTRNGTKADKDNLTNLFRCMGYTV 280


>L29052-1|AAA27982.2|  503|Caenorhabditis elegans cell death protein
           protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 222 KGIYLILGLLRFK-IP*QNGNKINPDNFSSLSICMYETV 335
           +G+ LI+    F+ +P +NG K + DN ++L  CM  TV
Sbjct: 242 RGMCLIINNEHFEQMPTRNGTKADKDNLTNLFRCMGYTV 280


>AF210702-1|AAG42045.1|  503|Caenorhabditis elegans caspase CED-3
           protein.
          Length = 503

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 222 KGIYLILGLLRFK-IP*QNGNKINPDNFSSLSICMYETV 335
           +G+ LI+    F+ +P +NG K + DN ++L  CM  TV
Sbjct: 242 RGMCLIINNEHFEQMPTRNGTKADKDNLTNLFRCMGYTV 280


>AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine
           receptor, class z protein20 protein.
          Length = 326

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -2

Query: 307 LLKLSGFILLPFCYGILKRNRPKIR*IPLFINHIDINYFYSI 182
           +L L  F + PF   + K NR   + IP+F     +N+FYS+
Sbjct: 32  VLLLLNFFMFPFYVYVFKANRVLDKEIPIF---PFVNHFYSV 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,470,233
Number of Sequences: 27780
Number of extensions: 200340
Number of successful extensions: 326
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)