Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1e01f
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0018 - 17208358-17208367,17208485-17208537,17209321-172093...    27   7.2  

>01_05_0018 -
           17208358-17208367,17208485-17208537,17209321-17209383,
           17209971-17210045,17210090-17210104,17210983-17211045,
           17211129-17211218,17211396-17211714,17211814-17211860,
           17211949-17212054,17212539-17212592,17212806-17212912,
           17212996-17213160,17213383-17213476,17213572-17213636,
           17213841-17213969
          Length = 484

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 519 YFHEIIHNFIRHPSRYRQVHS*IHNLIILLPYSQIL 412
           Y+  I  N +R  + YR+  + +   IILL YS +L
Sbjct: 32  YYFRIADNLLRQANIYREEKNLVDLYIILLRYSSLL 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,623,369
Number of Sequences: 37544
Number of extensions: 190137
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)