Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1d21r
         (612 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.09 |||mitochondrial type II fatty acid synthase componen...    75   8e-15
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   3.7  
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    25   6.5  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    25   6.5  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   6.5  

>SPAC4H3.09 |||mitochondrial type II fatty acid synthase
           component|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 74.9 bits (176), Expect = 8e-15
 Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
 Frame = -1

Query: 477 EIEERVLKVCKAYDKLS-ASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAE 301
           + E+R+LKV  ++DK+    ++T  S F NDLGLDSLD VEV+MA+E+EF  +IPD DA+
Sbjct: 34  DAEKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDAD 93

Query: 300 RLVRPKDIVQYI 265
            +    D + YI
Sbjct: 94  EITSVGDAISYI 105


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +1

Query: 265 NVLDNVFWSDQSLCIT--IRYLKSKFIFHCH 351
           N LDNVF S + L  +  + YL+ +F FHC+
Sbjct: 64  NKLDNVFSSLEWLTKSDAVIYLEDQFHFHCY 94


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = -1

Query: 537 NGVPQSHRYSTGVQSKLSVQEIEERVLKVCKAYDKLSASQLTVD--SHFMNDLGLDSLDH 364
           NG      + T +  K+   + EE V +  K +DK     +TV+  +H +  LG + L  
Sbjct: 62  NGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLG-ERLSQ 120

Query: 363 VEV 355
            EV
Sbjct: 121 EEV 123


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = -1

Query: 600 LQQKFSTIKAAVKIYKSQALQNGVPQSHRYSTGVQSKLSVQEIEERVLKVCKAYDKL 430
           L+++ + +K    +YKS+  ++ +     YS+  + K S++ ++ R+    K  +K+
Sbjct: 131 LEEEMAHLKKKCNVYKSKFEESSLRCKSLYSSNTKLKDSMETMKRRMETETKEMNKI 187


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = -1

Query: 537 NGVPQSHRYSTGVQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGL-DSLDHV 361
           NG P     + G++    VQEIE+  +++ KA  +   SQLT+    +N     +SL   
Sbjct: 285 NGFPVLLSDTAGLRKGEDVQEIEKIGIEIAKA--RAEESQLTLFVFPINYHSFSESLKQS 342

Query: 360 EVIMAMED 337
           E++  ++D
Sbjct: 343 EILETIKD 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,943
Number of Sequences: 5004
Number of extensions: 42813
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)