Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1d21r
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-18|CAB60498.1|  133|Caenorhabditis elegans Hypothetical...   110   9e-25
AF039048-3|AAK68334.1|  246|Caenorhabditis elegans Hypothetical ...    90   1e-18
U00033-7|AAC48302.2|  145|Caenorhabditis elegans Hypothetical pr...    73   1e-13
U29488-4|AAL27235.1|  401|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF040655-2|AAB95042.2|  306|Caenorhabditis elegans Serpentine re...    28   6.0  
Z92831-1|CAB07367.1|  332|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AL132860-18|CAB60498.1|  133|Caenorhabditis elegans Hypothetical
           protein Y56A3A.19 protein.
          Length = 133

 Score =  110 bits (264), Expect = 9e-25
 Identities = 52/88 (59%), Positives = 67/88 (76%)
 Frame = -1

Query: 525 QSHRYSTGVQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGLDSLDHVEVIMA 346
           Q  +YS   ++ L+ + +EER++ V   YDK+ A +LT+DS F  DLGLDSLDHVEV+MA
Sbjct: 41  QIRQYSA--KAPLTKKTLEERIVLVLSLYDKIDAKKLTMDSDFSKDLGLDSLDHVEVVMA 98

Query: 345 MEDEFGFEIPDGDAERLVRPKDIVQYIA 262
           ME+EFGFEIPDGDA+R   P+DI QYIA
Sbjct: 99  MEEEFGFEIPDGDADRFKTPRDIFQYIA 126


>AF039048-3|AAK68334.1|  246|Caenorhabditis elegans Hypothetical
           protein F16B4.6 protein.
          Length = 246

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 44/78 (56%), Positives = 59/78 (75%)
 Frame = -1

Query: 495 SKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIP 316
           +KL  +E+   V+    A   +S+++LT+DS F  DLGLD LDHVEV+MA+E+EFGFEIP
Sbjct: 165 AKLLQKEVFRFVIVTSSA---ISSTKLTMDSDFSTDLGLDFLDHVEVVMAIEEEFGFEIP 221

Query: 315 DGDAERLVRPKDIVQYIA 262
           DGDA+R   P+DI+QYIA
Sbjct: 222 DGDADRFKTPRDILQYIA 239


>U00033-7|AAC48302.2|  145|Caenorhabditis elegans Hypothetical
           protein F37C12.3 protein.
          Length = 145

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 34/79 (43%), Positives = 54/79 (68%), Gaps = 3/79 (3%)
 Frame = -1

Query: 492 KLSVQEIEERVLKVCKAYDKLSA---SQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFE 322
           +L+ +++E+RVLK  +++D+  A   S L +D+    D G DSLD VE++MA+EDEFGFE
Sbjct: 59  QLTFKQVEDRVLKAVRSWDRFPADKESLLKLDADLSKDFGFDSLDQVEIVMALEDEFGFE 118

Query: 321 IPDGDAERLVRPKDIVQYI 265
           IP  D+++    +D  +YI
Sbjct: 119 IPLQDSDKFKTIRDAFKYI 137


>U29488-4|AAL27235.1|  401|Caenorhabditis elegans Hypothetical
           protein C56C10.7a protein.
          Length = 401

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -1

Query: 399 FMNDLGLDSLDHVEVI-MAMEDEFGFEIPDGDAERLVRPKDIVQYI 265
           F+  + LD   H  V  +A EDEFG      D  +L++PKDI Q++
Sbjct: 205 FLEKVELDPSQHYNVTSIAHEDEFG------DVGKLLKPKDIRQFL 244


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = -1

Query: 423  SQLTVDSHFMNDLGLDSLDHVEVIMAME 340
            SQL  D++ ++DLGLDSL  VE+  A+E
Sbjct: 2206 SQLNADAN-LSDLGLDSLMGVEIKQALE 2232


>AF024496-1|AAB70339.1|  542|Caenorhabditis elegans Hypothetical
           protein ZC178.1 protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -1

Query: 438 DKLSASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAERLVR 289
           +KL + +L +       +  + LD VE++M++ED  G  + + D+  LVR
Sbjct: 152 EKLDSVELVMSVEDTIGVVREKLDSVELVMSVEDIIGVVLEELDSVELVR 201


>AF040655-2|AAB95042.2|  306|Caenorhabditis elegans Serpentine
           receptor, class x protein111 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 214 FWTSCIFETITNQTQNCIFLIYNWPKSIV 128
           F   CI +T++N     ++L+YN P +++
Sbjct: 42  FHVMCISKTVSNSLHILVYLLYNGPSALL 70


>Z92831-1|CAB07367.1|  332|Caenorhabditis elegans Hypothetical
           protein F22G12.3 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 156 KKMQFCVWFVIVSKIQLVQNYEVYIF-FIIHKYLP 257
           K++  C  F     IQLV+NY+V+I  F I +Y P
Sbjct: 59  KEIDICPGFDSNPIIQLVRNYDVWIISFGIKRYYP 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,057,174
Number of Sequences: 27780
Number of extensions: 250667
Number of successful extensions: 597
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)