Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1d21f
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.09 |||mitochondrial type II fatty acid synthase componen...    75   9e-15
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    27   3.0  
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    27   3.0  
SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|c...    26   3.9  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    26   3.9  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    25   6.8  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   6.8  
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|...    25   6.8  

>SPAC4H3.09 |||mitochondrial type II fatty acid synthase
           component|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 74.9 bits (176), Expect = 9e-15
 Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
 Frame = +1

Query: 289 EIEERVLKVCKAYDKLS-ASQLTVDSHFMNDLGLDSLDHVEVIMAMEDEFGFEIPDGDAE 465
           + E+R+LKV  ++DK+    ++T  S F NDLGLDSLD VEV+MA+E+EF  +IPD DA+
Sbjct: 34  DAEKRILKVVSSFDKIQDPKKVTPTSTFANDLGLDSLDAVEVVMAIEEEFSIQIPDKDAD 93

Query: 466 RLVRPKDIVQYI 501
            +    D + YI
Sbjct: 94  EITSVGDAISYI 105


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 66  NGCCEYFPKCFRW 104
           NG CE++ K FRW
Sbjct: 326 NGACEHYKKSFRW 338


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 2/111 (1%)
 Frame = +1

Query: 85  FRSAFGGLLRRSTTYRTSVTCRLSTVALQQKFSTIKAAVKIYKSQALQNGVPQSHRYSTG 264
           FR AF    R      TS    +   +L Q  +  +    I +  A  NG      + T 
Sbjct: 14  FREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTM 73

Query: 265 VQSKLSVQEIEERVLKVCKAYDKLSASQLTVD--SHFMNDLGLDSLDHVEV 411
           +  K+   + EE V +  K +DK     +TV+  +H +  LG + L   EV
Sbjct: 74  MARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLG-ERLSQEEV 123


>SPBC31F10.16 |||ChAPs family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 679

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/40 (32%), Positives = 16/40 (40%)
 Frame = +2

Query: 44  KHFVSLKKWLLRIFSEVLSVVYYGDQQRIERP*HVVFRPL 163
           KH V  + W     SEVL  + Y D        H  F P+
Sbjct: 164 KHIVDARMWTEAYMSEVLRSLLYSDDTNSRFAGHRRFNPI 203


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = -2

Query: 501 NVLDNVFWSDQSLCIT--IRYLKSKFIFHCH 415
           N LDNVF S + L  +  + YL+ +F FHC+
Sbjct: 64  NKLDNVFSSLEWLTKSDAVIYLEDQFHFHCY 94


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/57 (21%), Positives = 31/57 (54%)
 Frame = +1

Query: 166 LQQKFSTIKAAVKIYKSQALQNGVPQSHRYSTGVQSKLSVQEIEERVLKVCKAYDKL 336
           L+++ + +K    +YKS+  ++ +     YS+  + K S++ ++ R+    K  +K+
Sbjct: 131 LEEEMAHLKKKCNVYKSKFEESSLRCKSLYSSNTKLKDSMETMKRRMETETKEMNKI 187


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +1

Query: 229 NGVPQSHRYSTGVQSKLSVQEIEERVLKVCKAYDKLSASQLTVDSHFMNDLGL-DSLDHV 405
           NG P     + G++    VQEIE+  +++ KA  +   SQLT+    +N     +SL   
Sbjct: 285 NGFPVLLSDTAGLRKGEDVQEIEKIGIEIAKA--RAEESQLTLFVFPINYHSFSESLKQS 342

Query: 406 EVIMAMED 429
           E++  ++D
Sbjct: 343 EILETIKD 350


>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 29  C*KKIKHFVSLKKW--LLRIFSEVLSVVYYGDQQRI 130
           C K IKHF  LKKW  +   FSEV     +G   RI
Sbjct: 152 CGKGIKHF--LKKWENMPMAFSEVFLFNIFGGALRI 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,192
Number of Sequences: 5004
Number of extensions: 44458
Number of successful extensions: 105
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)