Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1d20r
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 30 2.0
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 29 6.2
08_02_0410 - 16842306-16842950,16844994-16845182 29 6.2
02_03_0315 - 17610605-17610855,17611304-17611370,17612876-176129... 29 6.2
11_06_0610 - 25449085-25453284 28 8.1
11_02_0005 - 7264736-7264753,7265086-7265188,7265487-7265539,726... 28 8.1
06_01_0684 + 5008881-5009504 28 8.1
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344... 28 8.1
>05_01_0578 +
5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 30.3 bits (65), Expect = 2.0
Identities = 21/57 (36%), Positives = 26/57 (45%)
Frame = +2
Query: 308 RMKLLKLVTLAKADGNPSWHLFWATKELIPIKVSTPLRFNKSGPPESPRQIPTPPAP 478
R+ L L LA A GNPS F + + + L F+ PP P P PPAP
Sbjct: 15 RLPHLALALLAVASGNPSLGGF--DRGDAEAEAYSILTFHDYTPPPPPSLPPPPPAP 69
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 28.7 bits (61), Expect = 6.2
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +2
Query: 353 NPSWHL-FWATKELIPIKVSTPLRFNKSGPPESPRQIPTPPAP 478
NP+ L F T + +P + L + S PP SP P PPAP
Sbjct: 145 NPASFLPFLQTSKWLPC---SDLATSSSAPPSSPSPSPPPPAP 184
>08_02_0410 - 16842306-16842950,16844994-16845182
Length = 277
Score = 28.7 bits (61), Expect = 6.2
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = -3
Query: 489 ICTNGAGGVGIC--RGDSGGPLLLNRNG 412
+C GAGGVG+C G+ GG + G
Sbjct: 207 VCGGGAGGVGVCARSGEGGGGWRAKKGG 234
>02_03_0315 -
17610605-17610855,17611304-17611370,17612876-17612941,
17613037-17613158,17613245-17613428,17614262-17614494,
17614580-17614913,17615043-17615186,17615303-17615344
Length = 480
Score = 28.7 bits (61), Expect = 6.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 395 PIKVSTPLRFNKSGPPESPRQIPTPPAP 478
PI + P + PP+ +Q P PPAP
Sbjct: 263 PIPATRPAPAARPAPPKPEKQSPAPPAP 290
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 395 PIKVSTPLRFNKSGPPESPRQIPTPP 472
P+ VS+P KS PP +P +P PP
Sbjct: 1139 PVPVSSPPPPEKSPPPPAPVILPPPP 1164
>11_02_0005 -
7264736-7264753,7265086-7265188,7265487-7265539,
7265791-7265880,7266093-7266217,7266528-7266753
Length = 204
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 404 VSTPLRFNKSGPPESPRQIPTPPAP 478
VS P K PP SP +PT PAP
Sbjct: 36 VSAPKPKAKPPPPPSPPPLPTAPAP 60
>06_01_0684 + 5008881-5009504
Length = 207
Score = 28.3 bits (60), Expect = 8.1
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +1
Query: 421 VQQKWSAGVSAANTDTASSVRADV*VPHEVATENGHALL 537
+++ ++ VS AN +A + AD+ VP +VATE ++
Sbjct: 102 LREVYAFAVSHANRPSAEAAPADIVVPAQVATEESDGVV 140
>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
29334956-29335045,29335120-29335155,29335222-29336553,
29337331-29337497,29337519-29337724,29337815-29338036,
29338332-29338381,29338754-29338870,29339471-29339551,
29339656-29339694,29340464-29340636,29340769-29340826,
29340934-29340987,29341066-29341613,29341695-29341755,
29342180-29342260,29342448-29342630,29342908-29343162,
29343304-29343423,29343497-29344901,29344988-29345085,
29345164-29345218,29345307-29345366,29346498-29346697
Length = 2077
Score = 28.3 bits (60), Expect = 8.1
Identities = 26/90 (28%), Positives = 39/90 (43%)
Frame = -3
Query: 705 LNNNIKPIALPNTADLNNLFVGQWAVAAGYGLTSDAQTGISVNQVMSQVNLQVITVQQCM 526
L+NN P P+T ++ ++ V L SD Q I NQ++S NLQ T
Sbjct: 1272 LSNNFLP---PSTFSASSRDAQKYGVPRCTSLQSDEQQKIHYNQILSGRNLQQ-TGGSVP 1327
Query: 525 AVFGSNFVRNSNICTNGAGGVGICRGDSGG 436
F R + + G G+G+ G + G
Sbjct: 1328 GAFPPGVDRGARVMP-GTHGMGMVSGLNRG 1356
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,817,055
Number of Sequences: 37544
Number of extensions: 441309
Number of successful extensions: 1709
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1696
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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