Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1d20f
         (622 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.6  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    22   4.8  
AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory recept...    21   6.3  
AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory recept...    21   6.3  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 142 KLDSSVQPDNAARIVGGAISPSNAHPYLAGLLIT 243
           K+D+S+  D+  + VGG    SN   +L   L++
Sbjct: 643 KIDTSLFVDHIRQCVGGGTIGSNQRNFLKNALMS 676


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 593 LVNPYPAATAHWPTNRLFKSA 531
           LV+P+ AA AH P +  F  A
Sbjct: 203 LVSPFLAAMAHRPPHFAFPGA 223


>AM292370-1|CAL23182.1|  418|Tribolium castaneum gustatory receptor
           candidate 49 protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 418 FVHPQWNPTLLNNDV 462
           FVH  WN   L N+V
Sbjct: 351 FVHEIWNKYALKNEV 365


>AM292335-1|CAL23147.2|  374|Tribolium castaneum gustatory receptor
           candidate 14 protein.
          Length = 374

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +1

Query: 418 FVHPQWNPTLLNNDV 462
           FVH  WN   L N+V
Sbjct: 307 FVHEIWNKYALKNEV 321


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,891
Number of Sequences: 336
Number of extensions: 3134
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)