Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1d19r
(771 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 27 3.0
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran... 26 5.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 5.2
SPCC61.05 |||S. pombe specific multicopy membrane protein family... 26 6.9
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G... 26 6.9
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1... 25 9.1
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 9.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 25 9.1
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 25 9.1
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 25 9.1
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 91 LAEWNDTTPIKIRWPLCTSDTGPPESPP--QGPTLPLPLVQRVESMILK 231
LA + TTP + PL +D G +PP G T PLP SM +K
Sbjct: 261 LAGIHITTP---QGPLMINDLGKTTAPPPPHGSTTPLPAAASYTSMNMK 306
>SPCC417.11c |||glutamate-1-semialdehyde
2,1-aminomutaseaminotransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 435
Score = 26.2 bits (55), Expect = 5.2
Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Frame = -2
Query: 572 NQGTE--ITAVFGSVTLFSGGTRVTTRTIAMHGSFNTRNLN--NDIAIITVPRINF---- 417
N GTE ITA+ + F+G V IAMHG ++ L+ + I+ + +F
Sbjct: 133 NSGTEANITAIIAA-RKFTGKRAV----IAMHGGYHGGPLSFAHGISPYNMDSQDFILCE 187
Query: 416 -NNNIQRIAIPNSSQSFLSFVGSWAQCAGFGVTRDSE 309
NN+ Q + NSSQ + + Q AG + D E
Sbjct: 188 YNNSTQFKELVNSSQDIAAVIVEAMQGAGGAIPADKE 224
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.2 bits (55), Expect = 5.2
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = +1
Query: 67 PGK--PMLQPLAEWNDTTPIKIRWPLCTSDTGPPESPPQG-PTLPL 195
PG+ P L PL + T+ + P + PP PP P+LP+
Sbjct: 396 PGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPM 441
>SPCC61.05 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 469
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Frame = +1
Query: 106 DTTPIKIRWPLCT----SDTGPPES 168
+T PI+I WP+ T D PPES
Sbjct: 170 ETEPIRIPWPVLTVEFYGDAPPPES 194
>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
Gde1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1076
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 497 TIAMHGSFNTRNLNNDIAIITVPRINFNN 411
T A +GS + N+ II +PR +F+N
Sbjct: 547 TTASNGSMTPSSSQNNSVIIDIPRSHFDN 575
>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 25.4 bits (53), Expect = 9.1
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 451 SLFKFRVLKLPCIAMVLVVTLVPPEKRVTDPKTAVISVPWLVPSHQQ*AAVTRRVF 618
SLFK K C+ + + L P K A+ S W+ + ++ A +R F
Sbjct: 111 SLFKILTPKFGCVCVSVDYRLAPESKFPVAHNDAIDSFKWVASNIEKLGANPKRGF 166
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 9.1
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 447 NIIVQVSSVEATVHSNGSGCDSGATREESY 536
N V SS T H++G G SGA +Y
Sbjct: 222 NFPVHASSNYNTTHTSGGGVHSGAATPNAY 251
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = +1
Query: 64 PPGKPMLQPLAEWNDTTPIKIRWPLCTSDTGPPESPPQGPTLP 192
PP P P + PI P P +SPP P+LP
Sbjct: 150 PPPSPASAPPIP-SKAPPIPSSLPPPAQPAAPVKSPPSAPSLP 191
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 9.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 491 AMHGSFNTRNLNNDIAIITVPRINFNNNI 405
A++ S NLN +I +VP NF+N++
Sbjct: 140 AIYSSSMATNLNKNINSTSVPAYNFHNSM 168
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.4 bits (53), Expect = 9.1
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 91 LAEWNDTTPIKIRWPLCTSDTGPPESPPQGPTLPLPLVQRVES 219
LA ND T I+ + T PP P ++P+P + +S
Sbjct: 228 LASSNDITVIESTIAPQQATTHPPSQPKNAVSVPIPKMDSTDS 270
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,850
Number of Sequences: 5004
Number of extensions: 69626
Number of successful extensions: 175
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -