Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1d19r
(771 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 34 0.14
12_02_0104 - 13644162-13645457 30 2.4
11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-80... 29 4.1
01_01_0008 + 34743-34939,35027-35072,35517-35668,35818-35877,365... 29 4.1
12_01_0107 - 843820-846335,846400-846511 29 5.4
03_02_0342 - 7645323-7645909,7646323-7646491 29 5.4
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 29 5.4
04_04_0208 - 23605701-23607149 28 7.2
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 28 9.5
09_06_0110 + 20923523-20924065 28 9.5
03_02_1009 + 13189349-13189592,13189782-13189882,13191085-131910... 28 9.5
03_02_0919 - 12392471-12392636,12392740-12392931,12393366-123934... 28 9.5
01_03_0184 + 13560830-13562981,13563604-13564088 28 9.5
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 33.9 bits (74), Expect = 0.14
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Frame = +3
Query: 129 LATVHQRHGTTRVPAARSNVTPAAGAESRVYDIE----AINSGAVDIVHHLQVHLSEDLI 296
L ++ R G + + + TP + + + A+N + D +H L H+ + I
Sbjct: 240 LLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALH-LFTHMKDHNI 298
Query: 297 VVDVLTIPGYSKACALSPATDEGEERLRAVGYRYTLNVVVE 419
D +T+ AC + DEG+ LR + Y L +E
Sbjct: 299 QPDSVTLTAVLSACTHAGMVDEGKRILRRMPLDYHLQPTIE 339
>12_02_0104 - 13644162-13645457
Length = 431
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -2
Query: 200 SGRGNVGPCGGDSGGPVSLVHSGQRIL 120
SGRG G GG P SLVH+G R L
Sbjct: 97 SGRGRRGRHGGGGDEPYSLVHTGVRDL 123
>11_01_0107 -
801148-803633,803727-803860,803990-804006,804321-804504,
804819-804883
Length = 961
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +3
Query: 435 SNDGNIIVQVSSVEATVHSNGSGCDSGATREES 533
++DG+I +V++ ++ VH +G+G D+ T +S
Sbjct: 265 TDDGSISNEVATTQSMVHMDGAGSDNNFTEVQS 297
>01_01_0008 +
34743-34939,35027-35072,35517-35668,35818-35877,
36594-36818,36892-37033,37276-37326,37434-37525,
38319-38445,38670-38751,38939-39046,39135-39189,
39456-39602,39703-39781,39885-40007
Length = 561
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 723 SFDFYEINNFISFQGWIIGALAKSQDLSVRV 631
S D +E+N+ +S +GW + AL + L + V
Sbjct: 470 SVDIFEVNDIMSSKGWHLNALQRPNSLHICV 500
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = +3
Query: 435 SNDGNIIVQVSSVEATVHSNGSGCDSGATREES 533
++DG+I +V++ ++ VH +G+G D+ T +S
Sbjct: 179 TDDGSISNEVATTQSMVHMDGAGFDNNFTEVQS 211
>03_02_0342 - 7645323-7645909,7646323-7646491
Length = 251
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = +1
Query: 40 RKEVTLA*PPGKPMLQPLAEWNDTTPIKIRWPLCTSDTGPPESPPQGP 183
+K+ A PP P P E+ TP P GPP P P
Sbjct: 166 KKKFMFAPPPPPPPRPPAPEYKPPTPTLTPIPTPEPSYGPPAPKPPAP 213
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -1
Query: 516 HQSHNQNHCYAR*LQHSKLEQ*YCHHYCSQDQFQQQHSAYSDTQ 385
HQ HNQNH Q+ + +Q Y H Q QQQ + Q
Sbjct: 183 HQHHNQNHHQQ---QYQQQQQQYQHQNLQQQYQQQQQNLQQQYQ 223
>04_04_0208 - 23605701-23607149
Length = 482
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 148 DTGPPESPPQGPTLPLP 198
+ GP E PP+ P +PLP
Sbjct: 209 EPGPSEQPPEAPVVPLP 225
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = -2
Query: 671 LVLLQNRRTSVCGSSILTNTRLVTAAHC 588
L LL N CGS I+T TR VT A C
Sbjct: 268 LALLNNN----CGSRIITTTRSVTVASC 291
>09_06_0110 + 20923523-20924065
Length = 180
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 157 PPESPPQGPTLPLP 198
PP +PPQ P LPLP
Sbjct: 37 PPATPPQPPLLPLP 50
>03_02_1009 +
13189349-13189592,13189782-13189882,13191085-13191090,
13191712-13191933,13192052-13192137,13192330-13192426,
13192817-13192909,13193031-13193186
Length = 334
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 207 ESRVYDIEAINSGAVDIVHHLQVHLSEDLIVVDVLTIPGYSKACALSPATDE 362
E+RV + N + HH HLSE +++++ L + + C L + +E
Sbjct: 252 EARVRALMYFNHSGYKLQHHPLTHLSE-ILMIEELDLETLCRLCGLEISNNE 302
>03_02_0919 -
12392471-12392636,12392740-12392931,12393366-12393463,
12393719-12394219,12394287-12394532,12395627-12396029,
12396155-12396348,12396755-12396925,12397064-12397366,
12397463-12397520,12397678-12397757,12398910-12398987,
12399530-12399613,12399692-12399757,12399908-12399980,
12400080-12400249,12400368-12400427,12400632-12400679,
12401217-12401255,12401364-12401372
Length = 1012
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1
Query: 678 WIIGALAKSQDLSVRVLYTYKYSPGDSSSLLVGWNQ 571
WI+ AL K+ +V L YK+S D++S + W Q
Sbjct: 747 WILSALNKATGKTVTSLEAYKFS--DATSAIYSWWQ 780
>01_03_0184 + 13560830-13562981,13563604-13564088
Length = 878
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = +1
Query: 130 WPLCTSDTGPPESPPQGPTLPLP 198
W LC + GP P + P PLP
Sbjct: 825 WALCVTGHGPRHGPRRHPVSPLP 847
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,586,550
Number of Sequences: 37544
Number of extensions: 532762
Number of successful extensions: 2097
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2092
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -