Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV1d19f
         (689 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    27   3.4  
SPCC417.11c |||glutamate-1-semialdehyde 2,1-aminomutaseaminotran...    26   4.5  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   5.9  
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    25   7.8  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.8  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   7.8  
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity...    25   7.8  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = -3

Query: 660 HRSRIRWPLCTSDTGPPESPP--QGPTLPLPLVQRVESMILK 541
           H +  + PL  +D G   +PP   G T PLP      SM +K
Sbjct: 265 HITTPQGPLMINDLGKTTAPPPPHGSTTPLPAAASYTSMNMK 306


>SPCC417.11c |||glutamate-1-semialdehyde
           2,1-aminomutaseaminotransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
 Frame = +2

Query: 200 NQGTE--ITAVFGSVTLFSGGTRVTTRTIAMHGSFNTRNLN--NDIAIITVPRINF---- 355
           N GTE  ITA+  +   F+G   V    IAMHG ++   L+  + I+   +   +F    
Sbjct: 133 NSGTEANITAIIAA-RKFTGKRAV----IAMHGGYHGGPLSFAHGISPYNMDSQDFILCE 187

Query: 356 -NNNIQRIAIPNSSQSFLSFVGSWAQCAGFGVTRDSE 463
            NN+ Q   + NSSQ   + +    Q AG  +  D E
Sbjct: 188 YNNSTQFKELVNSSQDIAAVIVEAMQGAGGAIPADKE 224


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 275 TIAMHGSFNTRNLNNDIAIITVPRINFNN 361
           T A +GS    +  N+  II +PR +F+N
Sbjct: 547 TTASNGSMTPSSSQNNSVIIDIPRSHFDN 575


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = -3

Query: 321 SLFKFRVLKLPCIAMVLVVTLVPPEKRVTDPKTAVISVPWLVPSHQQ*AAVTRRVF 154
           SLFK    K  C+ + +   L P  K       A+ S  W+  + ++  A  +R F
Sbjct: 111 SLFKILTPKFGCVCVSVDYRLAPESKFPVAHNDAIDSFKWVASNIEKLGANPKRGF 166


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 675 SGMIPHRSRIRWPLCTSDTGPPESPPQG 592
           S ++PH + +  PL  +  GPPE   QG
Sbjct: 829 SVLLPHMNFLMKPLIVALKGPPEIASQG 856


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 325 NIIVQVSSVEATVHSNGSGCDSGATREESY 236
           N  V  SS   T H++G G  SGA    +Y
Sbjct: 222 NFPVHASSNYNTTHTSGGGVHSGAATPNAY 251


>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ctf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 281 AMHGSFNTRNLNNDIAIITVPRINFNNNI 367
           A++ S    NLN +I   +VP  NF+N++
Sbjct: 140 AIYSSSMATNLNKNINSTSVPAYNFHNSM 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,860,657
Number of Sequences: 5004
Number of extensions: 59361
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)