Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1d19f
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194... 37 0.013
12_02_0104 - 13644162-13645457 31 0.86
04_04_0208 - 23605701-23607149 29 2.6
11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-80... 29 3.5
01_01_0008 + 34743-34939,35027-35072,35517-35668,35818-35877,365... 29 3.5
12_01_0107 - 843820-846335,846400-846511 29 4.6
03_01_0520 - 3900387-3900613,3900812-3900853,3902092-3902210,390... 29 4.6
02_05_0152 + 26308644-26308763,26311601-26311894 28 6.1
02_01_0776 + 5779673-5779987 28 6.1
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 28 8.0
09_06_0110 + 20923523-20924065 28 8.0
03_02_1009 + 13189349-13189592,13189782-13189882,13191085-131910... 28 8.0
03_02_0919 - 12392471-12392636,12392740-12392931,12393366-123934... 28 8.0
01_03_0184 + 13560830-13562981,13563604-13564088 28 8.0
>09_06_0371 +
22615809-22617431,22618312-22618422,22619361-22619453,
22619562-22619661,22619754-22619834,22620774-22621047,
22621254-22622069,22622921-22623029,22623509-22623602,
22623881-22623939,22624150-22624197
Length = 1135
Score = 37.1 bits (82), Expect = 0.013
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
Frame = -2
Query: 664 TTPIKDTLATVHQRHGTTRVPAARSNVTPAAGAESRVYDIE----AINSGAVDIVHHLQV 497
TT + L ++ R G + + + TP + + + A+N + D +H L
Sbjct: 233 TTNLATALLNMYMRCGDVQTACSLFHSTPTRHKDVHTWTVMIAGLALNGFSTDALH-LFT 291
Query: 496 HLSEDLIVVDVLTIPGYSKACALSPATDEGEERLRAVGYRYTLNVVVE 353
H+ + I D +T+ AC + DEG+ LR + Y L +E
Sbjct: 292 HMKDHNIQPDSVTLTAVLSACTHAGMVDEGKRILRRMPLDYHLQPTIE 339
>12_02_0104 - 13644162-13645457
Length = 431
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/29 (55%), Positives = 17/29 (58%)
Frame = +2
Query: 572 SGRGNVGPCGGDSGGPVSLVHSGQRILDR 658
SGRG G GG P SLVH+G R L R
Sbjct: 97 SGRGRRGRHGGGGDEPYSLVHTGVRDLAR 125
>04_04_0208 - 23605701-23607149
Length = 482
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 666 IPHRSRIRWPLCTSDTGPPESPPQGPTLPLP 574
+P R R R P + GP E PP+ P +PLP
Sbjct: 198 LPERRR-RKP--ADEPGPSEQPPEAPVVPLP 225
>11_01_0107 -
801148-803633,803727-803860,803990-804006,804321-804504,
804819-804883
Length = 961
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = -2
Query: 337 SNDGNIIVQVSSVEATVHSNGSGCDSGATREES 239
++DG+I +V++ ++ VH +G+G D+ T +S
Sbjct: 265 TDDGSISNEVATTQSMVHMDGAGSDNNFTEVQS 297
>01_01_0008 +
34743-34939,35027-35072,35517-35668,35818-35877,
36594-36818,36892-37033,37276-37326,37434-37525,
38319-38445,38670-38751,38939-39046,39135-39189,
39456-39602,39703-39781,39885-40007
Length = 561
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 49 SFDFYEINNFISFQGWIIGALAKSQDLSVRV 141
S D +E+N+ +S +GW + AL + L + V
Sbjct: 470 SVDIFEVNDIMSSKGWHLNALQRPNSLHICV 500
>12_01_0107 - 843820-846335,846400-846511
Length = 875
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/33 (33%), Positives = 23/33 (69%)
Frame = -2
Query: 337 SNDGNIIVQVSSVEATVHSNGSGCDSGATREES 239
++DG+I +V++ ++ VH +G+G D+ T +S
Sbjct: 179 TDDGSISNEVATTQSMVHMDGAGFDNNFTEVQS 211
>03_01_0520 -
3900387-3900613,3900812-3900853,3902092-3902210,
3903633-3903712,3903829-3903856,3904151-3904272,
3904714-3904857,3904897-3906327
Length = 730
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = +1
Query: 256 HQSHNQNHCYAR*LQHSKLEQ*YCHHYCSQDQFQQQHSAYSDTQ 387
HQ HNQNH Q+ + +Q Y H Q QQQ + Q
Sbjct: 183 HQHHNQNHHQQ---QYQQQQQQYQHQNLQQQYQQQQQNLQQQYQ 223
>02_05_0152 + 26308644-26308763,26311601-26311894
Length = 137
Score = 28.3 bits (60), Expect = 6.1
Identities = 12/43 (27%), Positives = 20/43 (46%)
Frame = -3
Query: 678 QSGMIPHRSRIRWPLCTSDTGPPESPPQGPTLPLPLVQRVESM 550
++G+ P+R R WP+ T P P P P+ Q + +
Sbjct: 49 KNGLAPNRHRSAWPIVIGPTITPMMKKWKPESPPPVAQGTKGL 91
>02_01_0776 + 5779673-5779987
Length = 104
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 572 SGRGNVGPCGGDSGGPVSLVHSGQRILDRCGII 670
+GRG + PC GG ++V GQR LD G++
Sbjct: 39 AGRGWL-PCPDSRGGTSAVVGGGQRHLDLMGLV 70
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/28 (53%), Positives = 16/28 (57%)
Frame = +2
Query: 101 LVLLQNRRTSVCGSSILTNTRLVTAAHC 184
L LL N CGS I+T TR VT A C
Sbjct: 268 LALLNNN----CGSRIITTTRSVTVASC 291
>09_06_0110 + 20923523-20924065
Length = 180
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -3
Query: 615 PPESPPQGPTLPLP 574
PP +PPQ P LPLP
Sbjct: 37 PPATPPQPPLLPLP 50
>03_02_1009 +
13189349-13189592,13189782-13189882,13191085-13191090,
13191712-13191933,13192052-13192137,13192330-13192426,
13192817-13192909,13193031-13193186
Length = 334
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 565 ESRVYDIEAINSGAVDIVHHLQVHLSEDLIVVDVLTIPGYSKACALSPATDE 410
E+RV + N + HH HLSE +++++ L + + C L + +E
Sbjct: 252 EARVRALMYFNHSGYKLQHHPLTHLSE-ILMIEELDLETLCRLCGLEISNNE 302
>03_02_0919 -
12392471-12392636,12392740-12392931,12393366-12393463,
12393719-12394219,12394287-12394532,12395627-12396029,
12396155-12396348,12396755-12396925,12397064-12397366,
12397463-12397520,12397678-12397757,12398910-12398987,
12399530-12399613,12399692-12399757,12399908-12399980,
12400080-12400249,12400368-12400427,12400632-12400679,
12401217-12401255,12401364-12401372
Length = 1012
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 94 WIIGALAKSQDLSVRVLYTYKYSPGDSSSLLVGWNQ 201
WI+ AL K+ +V L YK+S D++S + W Q
Sbjct: 747 WILSALNKATGKTVTSLEAYKFS--DATSAIYSWWQ 780
>01_03_0184 + 13560830-13562981,13563604-13564088
Length = 878
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/23 (43%), Positives = 12/23 (52%)
Frame = -3
Query: 642 WPLCTSDTGPPESPPQGPTLPLP 574
W LC + GP P + P PLP
Sbjct: 825 WALCVTGHGPRHGPRRHPVSPLP 847
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,807,866
Number of Sequences: 37544
Number of extensions: 444116
Number of successful extensions: 1992
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1990
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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