Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV1d19f
(689 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 46 3e-05
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 37 0.016
Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical pr... 36 0.027
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 31 0.78
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 28 7.2
Z82093-2|CAB05019.1| 213|Caenorhabditis elegans Hypothetical pr... 27 9.6
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 45.6 bits (103), Expect = 3e-05
Identities = 46/176 (26%), Positives = 73/176 (41%), Gaps = 6/176 (3%)
Frame = +2
Query: 110 LQNRRTSV--CGSSILTNTRLVTAAHCWWDGTNQGTEITAVFGSVTLFSGGTRVTTRTIA 283
L+N+ T CG+SIL T L+TAAHC+ + + V + G
Sbjct: 44 LRNKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQR 103
Query: 284 MHGSFNTRNL-NNDIAIITV--PRINFNNNIQRIAIPNSSQSFLSFVGSWAQCAGFGVTR 454
+H +++ ++DIAI+ + P I FN Q I +P S+ F+ G +G+G +
Sbjct: 104 IHFYPLYKDIFSHDIAILEIPYPGIEFNEYAQPICLP--SKDFVYTPGRQCVVSGWG-SM 160
Query: 455 DSEXXXXXXXXXXXXXXXXXXXDCSTVYGFNIIDSTLCTSG-RGNVGPCGGDSGGP 619
+ S +Y ++ S C G + C GDSGGP
Sbjct: 161 GLRYAERLQAALIPIINRFDCVNSSQIYS-SMSRSAFCAGYLEGGIDSCQGDSGGP 215
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 36.7 bits (81), Expect = 0.016
Identities = 40/174 (22%), Positives = 67/174 (38%), Gaps = 5/174 (2%)
Frame = +2
Query: 134 CGSSILTNTRLVTAAHCWWDGTNQGTEITAVFGSVTLFSGGTRVTTRTIAMHGSFNTRNL 313
CG S++ ++TAAHC+ + V G + RVT +++H +N
Sbjct: 84 CGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGGHRSGSGSPHRVT--AVSIHPWYNIGFP 141
Query: 314 NN-DIAIITV-PRINFNNNIQRIAIPN--SSQSFLSFVGSWAQCAGFGVTRDSEXXXXXX 481
++ D AI+ + P +N + + I +P+ + ++ L V W G + S
Sbjct: 142 SSYDFAIMRIHPPVNTSTTARPICLPSLPAVENRLCVVTGW----GSTIEGSSLSAPTLR 197
Query: 482 XXXXXXXXXXXXXDCSTVYGFNIIDSTLCTS-GRGNVGPCGGDSGGPVSLVHSG 640
G + S LC G + C GDSGGP+ G
Sbjct: 198 EIHVPLLSTLFCSSLPNYIGRIHLPSMLCAGYSYGKIDSCQGDSGGPLMCARDG 251
>Z78013-9|CAB01420.2| 297|Caenorhabditis elegans Hypothetical
protein F15B9.5 protein.
Length = 297
Score = 35.9 bits (79), Expect = 0.027
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Frame = +2
Query: 92 AGLLVLLQNRRTSVCGSSILTNTRLVTAAHCWWDGTNQGTEITAVFGSVTL---FSGGTR 262
A ++ + T+VCG ++ + ++T+AHC + G + G V L G
Sbjct: 32 ASVITRFPDGTTNVCGGVLIAPSIVITSAHCVFSGDDFAVTAKVTLGDVHLNKHDDGEQE 91
Query: 263 VTTRTIAMHGSF--NTRNLNNDIAIITVPR 346
+ +A+ F + N+D+A+I +P+
Sbjct: 92 FRSHAMAISKKFFNDASEANDDVAVIFLPQ 121
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 31.1 bits (67), Expect = 0.78
Identities = 44/205 (21%), Positives = 79/205 (38%), Gaps = 10/205 (4%)
Frame = +2
Query: 83 HFKAGLLVLLQNRRTSVCGSSILTNTRLVTAAHCWWDGTNQGTEITAVFGSVTLFSGGTR 262
++ A L+ N + +CG++++ + LVTAAHC Q + V+ +
Sbjct: 49 NWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHC----ALQLQTRSFVYVREPKNNRERS 104
Query: 263 VTTRTIAMHGSFNTRNLNNDIAIITVPRINFNNNIQRIAIPNSSQSFLSFVGSWAQCAGF 442
+ + +H +N + +NDIA++ + I+ + + + L + G+
Sbjct: 105 FSVKEAYIHSGYNNQTADNDIALLRISSDLSKLGIKPVCLVHDDSKLLKQYKN-GVVIGY 163
Query: 443 GVT--RDSE---XXXXXXXXXXXXXXXXXXXDCSTVYGFNIIDSTLCT-----SGRGNVG 592
G+T DS DC + F + S T +G G
Sbjct: 164 GLTLGEDSSGEPKLINSQTLQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAYLHG 223
Query: 593 PCGGDSGGPVSLVHSGQRILDRCGI 667
GDSGGP+ L+H + GI
Sbjct: 224 TAPGDSGGPL-LIHKSNGEYVQIGI 247
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Frame = -2
Query: 625 RHGTTRVPAARSNVTPAAGAES----RVYDIEAINSGAVDIVHHLQVHLSE 485
R GTT P+A +T + A++ R+ ++E +V I +VHLS+
Sbjct: 625 RAGTTSAPSAPGTLTRSTSAQNNMHKRIEELEEALRESVSITAEREVHLSQ 675
>Z82093-2|CAB05019.1| 213|Caenorhabditis elegans Hypothetical
protein ZK39.3 protein.
Length = 213
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 119 RRTSVCGSSILTNTRLVTAAHCWWDGTNQGT 211
RRT C + +T+ T + W DG+ GT
Sbjct: 111 RRTDACMTKSITSDCTATNSFTWTDGSTSGT 141
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,124,648
Number of Sequences: 27780
Number of extensions: 350013
Number of successful extensions: 1335
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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